Vaccine Ontology - cell - Classes | NCBO BioPortal

Vaccine Ontology

Last uploaded: February 26, 2025

Id	http://purl.obolibrary.org/obo/CL_0000000 http://purl.obolibrary.org/obo/CL_0000000
Preferred Name	cell
Definitions	A material entity of anatomical origin (part of or deriving from an organism) that has as its parts a maximally connected cell compartment surrounded by a plasma membrane. The definition of cell is intended to represent all cells, and thus a cell is defined as a material entity and not an anatomical structure, which implies that it is part of an organism (or the entirety of one).
Type	http://www.w3.org/2002/07/owl#Class

definition	A material entity of anatomical origin (part of or deriving from an organism) that has as its parts a maximally connected cell compartment surrounded by a plasma membrane.
label	cell
comment	The definition of cell is intended to represent all cells, and thus a cell is defined as a material entity and not an anatomical structure, which implies that it is part of an organism (or the entirety of one).
prefLabel	cell
has cross-reference	MESH:D002477 XAO:0003012 FBbt:00007002 CALOHA:TS-2035 KUPO:0000002 WBbt:0004017 ZFA:0009000 VHOG:0001533 FMA:68646 GO:0005623 See more See less
inSubset	http://purl.oboInOwllibrary.org/oboInOwl/ubprop#_upper_level http://purl.oboInOwllibrary.org/oboInOwl/cl#cellxgene_subset
prefixIRI	CL:0000000
subClassOf	http://purl.obolibrary.org/obo/UBERON_0000061
imported from	http://purl.obolibrary.org/obo/cl.owl
type	http://www.w3.org/2002/07/owl#Class

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Subject	Author	Type	Class	Created
Terms prefixed with AE	whetzel	Comment	http://purl.obolibrary.org/obo/VO_0000357	2012-04-26
Duplicate term	whetzel	Comment	http://purl.obolibrary.org/obo/VO_0000151	2010-06-13
Namespace declaration?	whetzel	Comment		2009-07-30

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Add NCBO Web Widgets to your site for VO

Widget type	Widget demonstration
Jump To Type a class name from VO and jump to it in BioPortal Get code	Step 2: Follow the Instructions Download the quick_jump.js file and put it on your server Copy the code below and paste it to your HTML page Note: If you would like to use Quick Jump across multiple ontologies: You can enter a comma-separated list of ontology ids: var BP_ontology_id = "NCIt,SNOMEDCT"; You can set the variable to 'all' to search all ontologies in BioPortal: var BP_ontology_id = "all"; To include definitions in the Jump To drop-down, add the following variable in Javascript: var BP_include_definitions = true; In the code that you just pasted, make sure to change the path to the quick_jump.js file to point to the location where you put the file (relative to your HTML file) For example, if you put the quick_jump.js file in the same directory as your HTML file, this is the code you would use: <div id="bp_quick_jump"></div> <script type="text/javascript"> var BP_ontology_id = "VO";</script> <script src="quick_jump.js" type="text/javascript" charset="utf-8"></script> For more help visit NCBO Widget Wiki
Form Autocomplete Fill your form fields with classes from VO Get code	Example 1 (start typing the class name to get its full URI) Example 2 (get the ID for a class) Example 3 (get the preferred name for a class) Step 2: Follow the Instructions Download the form_complete.js file and put it on your server. In the header for the page where you want the form field, include the form_complete.js file. On your form, for the fields where you want to use the class-selection widget, specify the field's class in the following format: `bp_form_complete-{ontology_id_list}-{value}` For example, `bp_form_complete-NCIT-uri` will use NCI Thesaurus (ontology id is NCIT) and will put the class URI in the field after the user selects the class from the pull-down list. Note: In addition to single ontology ids, you can use a list: `bp_form_complete-NCIT,NCBITAXON-uri` OR use 'all' to search across all BioPortal ontologies: `bp_form_complete-all-uri` The autocomplete widget accesses ontology content from the latest version of the ontology. You can use the following parameters to select which value will be placed into the user-visible input field: `uri` put the complete URI of the class (e.g., http://purl.obolibrary.org/obo/VO_0003632 ) `shortid` put the short id of the class, as used in BioPortal (e.g., "Common_Neoplasm"); `name` put the preferred name of the class (e.g., "Common Neoplasm"); In addition to the input element you defined, there are four hidden form elements that are created and then set when a user selects a class from the list. For example, if you create a field with this code: <input type="text" name="a" class="bp_form_complete-all-uri" size="100"/> The 'name' attribute is used to create the four following fields (note how the 'a' from the name attribute is appended to the id attribute): <input type="hidden" id="a_bioportal_preferred_name"> <input type="hidden" id="a_bioportal_concept_id"> <input type="hidden" id="a_bioportal_ontology_id"> <input type="hidden" id="a_bioportal_full_id"> Additional parameters are documented on the NCBO Widget Wiki For more help visit NCBO Widget Wiki
Visualization Display a visualization for a given class in VO Get code	Step 2: Follow the Instructions Copy the code below and paste it to your HTML page <iframe frameborder="0" src="/widgets/visualization?ontology=VO&class=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FVO_0003632&apikey=YOUR_API_KEY"></iframe> For more help visit NCBO Widget Wiki
Tree Widget Display a class tree with a search field for VO Get code	Step 2: Follow the Instructions Copy the code below and paste it to your HTML page <link rel="stylesheet" type="text/css" href="/widgets/jquery.ncbo.tree.css"> <script src="/widgets/jquery.ncbo.tree-2.0.2.js"></script> <div id="widget_tree"></div> var widget_tree = $("#widget_tree").NCBOTree({ apikey: "YOUR_API_KEY", ontology: "VO" }); You can also view a detailed demonstration For more help visit NCBO Widget Wiki