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Protein Modification Ontology
Last uploaded:
June 14, 2022
Acronym | PSIMOD |
Visibility | Public |
Description | PSI-MOD is an ontology consisting of terms that describe protein chemical modifications, logically linked by an is_a relationship in such a way as to form a direct acyclic graph (DAG). The PSI-MOD ontology has more than 45 top-level nodes, and provides alternative hierarchical paths for classifying protein modifications either by the molecular structure of the modification, or by the amino acid residue that is modified. |
Status | Production |
Format | OBO |
Contact | Sylvie Ricard-Blum, sylvie.ricard-blum@univ-lyon1.fr Pierre-Alain Binz, pierre-alain.binz@chuv.ch |
Groups | OBO Foundry, Proteomics Standards Initiative |
Version | Released | Uploaded | Downloads |
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1.031.6 (Parsed, Indexed, Metrics, Annotator) | 06/14/2022 | 06/14/2022 | OBO | CSV | RDF/XML | Diff |
1.031.4 (Archived) | 05/13/2022 | 05/13/2022 | OBO | Diff |
1.031.4 (Archived) | 02/21/2022 | 02/21/2022 | OBO | Diff |
1.031.3 (Archived) | 02/20/2022 | 02/20/2022 | OBO | Diff |
1.013.0 (Archived) | 03/10/2021 | 03/10/2021 | OBO | Diff |
1.013.0 (Archived) | 02/12/2021 | 02/12/2021 | OBO | Diff |
1.013.0 (Archived) | 02/01/2021 | 02/01/2021 | OBO | Diff |
1.013.0 (Archived) | 01/11/2021 | 01/11/2021 | OBO | Diff |
1.013.0 (Archived) | 12/04/2020 | 12/04/2020 | OBO | Diff |
1.013.0 (Archived) | 12/03/2020 | 12/03/2020 | OBO | Diff |
1.013.0 (Archived) | 11/30/2020 | 11/30/2020 | OBO | Diff |
1.013.0 (Archived) | 11/24/2020 | 11/24/2020 | OBO | Diff |
1.013.0 (Archived) | 10/20/2020 | 10/20/2020 | OBO | Diff |
1.013.0 (Archived) | 10/05/2020 | 10/05/2020 | OBO | Diff |
1.013.0 (Archived) | 07/22/2020 | 07/22/2020 | OBO | Diff |
1.013.0 (Archived) | 06/25/2020 | 06/25/2020 | OBO | Diff |
1.013.0 (Archived) | 06/18/2020 | 06/18/2020 | OBO | Diff |
1.013.0 (Archived) | 05/08/2020 | 05/08/2020 | OBO | Diff |
1.013.0 (Archived) | 04/20/2020 | 04/20/2020 | OBO | Diff |
1.013.0 (Archived) | 04/09/2020 | 04/09/2020 | OBO | Diff |
1.013.0 (Archived) | 02/22/2020 | 02/22/2020 | OBO | Diff |
1.013.0 (Archived) | 01/29/2018 | 03/01/2018 | OBO | Diff |
1.013.0 (Archived) | 05/30/2014 | 06/17/2014 | OBO | Diff |
1.317 (Archived) | 11/27/2007 | 11/27/2007 | OBO |
more... |
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Preferred Name | menadione quinone derivative | |
Synonyms |
Menadione Menadione quinone derivative |
|
Definitions |
modification from Unimod Chemical derivative |
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ID |
http://purl.obolibrary.org/obo/MOD_00621 |
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database_cross_reference |
Origin: Unimod: DiffAvg: MassAvg: DiffFormula: Source: TermSpec: DiffMono: MassMono: Formula:
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definition |
modification from Unimod Chemical derivative
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has_obo_namespace |
PSI-MOD
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has_related_synonym |
Menadione Menadione quinone derivative
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id |
MOD:00621
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label |
menadione quinone derivative
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notation |
MOD:00621
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prefLabel |
menadione quinone derivative
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treeView | ||
subClassOf |
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Add NCBO Web Widgets to your site for PSIMOD
Widget type | Widget demonstration |
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Step 2: Follow the Instructions
For more help visit NCBO Widget Wiki |
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Example 1 (start typing the class name to get its full URI)
Example 2 (get the ID for a class) Example 3 (get the preferred name for a class) Step 2: Follow the Instructions
For more help visit NCBO Widget Wiki |
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Step 2: Follow the InstructionsCopy the code below and paste it to your HTML page <iframe frameborder="0" src="/widgets/visualization?ontology=PSIMOD&class=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FMOD_00322&apikey=YOUR_API_KEY"></iframe> For more help visit NCBO Widget Wiki |
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Step 2: Follow the InstructionsCopy the code below and paste it to your HTML page <link rel="stylesheet" type="text/css" href="/widgets/jquery.ncbo.tree.css"> <script src="/widgets/jquery.ncbo.tree-2.0.2.js"></script> <div id="widget_tree"></div> var widget_tree = $("#widget_tree").NCBOTree({ apikey: "YOUR_API_KEY", ontology: "PSIMOD" }); You can also view a detailed demonstration For more help visit NCBO Widget Wiki |