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Protein Modification Ontology
Last uploaded:
June 14, 2022
| Acronym | PSIMOD |
| Visibility | Public |
| Description | PSI-MOD is an ontology consisting of terms that describe protein chemical modifications, logically linked by an is_a relationship in such a way as to form a direct acyclic graph (DAG). The PSI-MOD ontology has more than 45 top-level nodes, and provides alternative hierarchical paths for classifying protein modifications either by the molecular structure of the modification, or by the amino acid residue that is modified. |
| Status | Production |
| Format | OBO |
| Contact | Sylvie Ricard-Blum, sylvie.ricard-blum@univ-lyon1.fr Pierre-Alain Binz, pierre-alain.binz@chuv.ch |
| Groups | OBO Foundry, Proteomics Standards Initiative |
| Version | Released | Uploaded | Downloads |
|---|---|---|---|
| 1.031.6 (Parsed, Indexed, Metrics, Annotator) | 06/14/2022 | 06/14/2022 | OBO | CSV | RDF/XML | Diff |
| 1.031.4 (Archived) | 05/13/2022 | 05/13/2022 | OBO | Diff |
| 1.031.4 (Archived) | 02/21/2022 | 02/21/2022 | OBO | Diff |
| 1.031.3 (Archived) | 02/20/2022 | 02/20/2022 | OBO | Diff |
| 1.013.0 (Archived) | 03/10/2021 | 03/10/2021 | OBO | Diff |
| 1.013.0 (Archived) | 02/12/2021 | 02/12/2021 | OBO | Diff |
| 1.013.0 (Archived) | 02/01/2021 | 02/01/2021 | OBO | Diff |
| 1.013.0 (Archived) | 01/11/2021 | 01/11/2021 | OBO | Diff |
| 1.013.0 (Archived) | 12/04/2020 | 12/04/2020 | OBO | Diff |
| 1.013.0 (Archived) | 12/03/2020 | 12/03/2020 | OBO | Diff |
| 1.013.0 (Archived) | 11/30/2020 | 11/30/2020 | OBO | Diff |
| 1.013.0 (Archived) | 11/24/2020 | 11/24/2020 | OBO | Diff |
| 1.013.0 (Archived) | 10/20/2020 | 10/20/2020 | OBO | Diff |
| 1.013.0 (Archived) | 10/05/2020 | 10/05/2020 | OBO | Diff |
| 1.013.0 (Archived) | 07/22/2020 | 07/22/2020 | OBO | Diff |
| 1.013.0 (Archived) | 06/25/2020 | 06/25/2020 | OBO | Diff |
| 1.013.0 (Archived) | 06/18/2020 | 06/18/2020 | OBO | Diff |
| 1.013.0 (Archived) | 05/08/2020 | 05/08/2020 | OBO | Diff |
| 1.013.0 (Archived) | 04/20/2020 | 04/20/2020 | OBO | Diff |
| 1.013.0 (Archived) | 04/09/2020 | 04/09/2020 | OBO | Diff |
| 1.013.0 (Archived) | 02/22/2020 | 02/22/2020 | OBO | Diff |
| 1.013.0 (Archived) | 01/29/2018 | 03/01/2018 | OBO | Diff |
| 1.013.0 (Archived) | 05/30/2014 | 06/17/2014 | OBO | Diff |
| 1.317 (Archived) | 11/27/2007 | 11/27/2007 | OBO |
| more... | |||
No views of PSIMOD available
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| Id | http://purl.obolibrary.org/obo/MOD_00128
http://purl.obolibrary.org/obo/MOD_00128
|
|---|---|
| Preferred Name | N6-pyridoxal phosphate-L-lysine |
| Definitions |
A protein modification that effectively converts an L-lysine residue to N6-pyridoxal phosphate-L-lysine.
From DeltaMass: Average Mass: 231
|
| Synonyms |
Pyridoxal phosphate
PyridoxalPhosphate
N6PydoxLys
N6-pyridoxal phosphate-L-lysine
Pyridoxal phosphate (Schiff Base formed to lysine)
MOD_RES N6-(pyridoxal phosphate)lysine
(2S)-2-amino-6-[([3-hydroxy-2-methyl-5-phosphonooxymethylpyridin-4-yl]methylidene)amino]hexanoic acid
|
| Type | http://www.w3.org/2002/07/owl#Class |
All Properties
| definition | A protein modification that effectively converts an L-lysine residue to N6-pyridoxal phosphate-L-lysine. |
|---|---|
| label | N6-pyridoxal phosphate-L-lysine
|
| comment | From DeltaMass: Average Mass: 231
|
| prefLabel | N6-pyridoxal phosphate-L-lysine
|
| database_cross_reference |
Origin:
Unimod:
DiffAvg:
MassAvg:
uniprot.ptm:PTM-0387
DiffFormula:
Source:
TermSpec:
DiffMono:
MassMono:
Formula:
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|
| notation | MOD:00128
|
| in_subset | |
| has_related_synonym |
Pyridoxal phosphate
PyridoxalPhosphate
|
| id | MOD:00128
|
| has_obo_namespace | PSI-MOD
|
| subClassOf | |
| type | |
| has_exact_synonym | N6PydoxLys
N6-pyridoxal phosphate-L-lysine
Pyridoxal phosphate (Schiff Base formed to lysine)
MOD_RES N6-(pyridoxal phosphate)lysine
(2S)-2-amino-6-[([3-hydroxy-2-methyl-5-phosphonooxymethylpyridin-4-yl]methylidene)amino]hexanoic acid
|
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