PLOS Thesaurus - Microbiology - Classes | NCBO BioPortal

PLOS Thesaurus

Last uploaded: September 21, 2017

Details

Acronym	PLOSTHES
Visibility	Public
Description	The PLOS Thesaurus includes over 10,000 Subject Area terms covering the wide range of research topics included the PLOS journals. It was initially built for PLOS in 2012 by Access Innovations (http://www.accessinn.com/). The entire corpus of PLOS articles was analysed to ensure that the thesaurus covers relevant research domains comprehensively. Updates are released several times a year.
Status	Production
Format	SKOS
Contact	PLOS Taxonomy Team, subjectareas@plos.org

Version	Released	Uploaded	Downloads
plosthes.2017-1 (Parsed, Indexed, Metrics, Annotator, Error Diff)	09/14/2017	09/21/2017	SKOS \| CSV \| RDF/XML
plosthes.2016-4 (Archived)	02/22/2017	05/09/2017	SKOS
plosthes.2015-4 (Archived)	03/22/2016	04/11/2016	SKOS
plosthes.2014-5 (Archived)	02/13/2015	04/09/2015	SKOS

No views of PLOSTHES available

Classes	4
Individuals	10,712
Properties	8
Maximum depth	0
Maximum number of children	4
Average number of children	4
Classes with a single child	0
Classes with more than 25 children	0
Classes with no definition	4

No projects using PLOSTHES

Id	http://localhost/plosthes.2017-1#3803 http://localhost/plosthes.2017-1#3803
Preferred Name	Microbiology
Type	http://www.w3.org/2004/02/skos/core#Concept

prefLabel	Microbiology
alpha	Microbiology
scopeNote	The study of microorganisms such as fungi, bacteria, algae, archaea, and viruses. https://meshb.nlm.nih.gov/#/record/ui?ui=D008829 RD
narrower	http://localhost/plosthes.2017-1#7298 http://localhost/plosthes.2017-1#803 http://localhost/plosthes.2017-1#762 http://localhost/plosthes.2017-1#7550 http://localhost/plosthes.2017-1#6288 http://localhost/plosthes.2017-1#8057 http://localhost/plosthes.2017-1#4195 http://localhost/plosthes.2017-1#9355 http://localhost/plosthes.2017-1#221 http://localhost/plosthes.2017-1#3449 http://localhost/plosthes.2017-1#10531 http://localhost/plosthes.2017-1#10129 http://localhost/plosthes.2017-1#2234 http://localhost/plosthes.2017-1#702 http://localhost/plosthes.2017-1#4326 http://localhost/plosthes.2017-1#1749 http://localhost/plosthes.2017-1#4649 http://localhost/plosthes.2017-1#6056 See more See less
homepage	http://journals.plos.org/plosone/browse/microbiology
Source	http://localhost/plosthes.2017-1#T0
status	Accepted
Previous_Classification	10.230^Microbiology
editorialNote	Scientific study of microorganisms, a diverse group of simple life-forms including protozoans, algae, molds, bacteria, and viruses. Microbiology is concerned with the structure, function, and classification of these organisms and with ways of controlling and using their activities.
type	http://www.w3.org/2004/02/skos/core#Concept http://www.w3.org/2002/07/owl#NamedIndividual
broader	http://localhost/plosthes.2017-1#3625
related	http://localhost/plosthes.2017-1#1000

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Add NCBO Web Widgets to your site for PLOSTHES

Widget type	Widget demonstration
Jump To Type a class name from PLOSTHES and jump to it in BioPortal Get code	Step 2: Follow the Instructions Download the quick_jump.js file and put it on your server Copy the code below and paste it to your HTML page Note: If you would like to use Quick Jump across multiple ontologies: You can enter a comma-separated list of ontology ids: var BP_ontology_id = "NCIt,SNOMEDCT"; You can set the variable to 'all' to search all ontologies in BioPortal: var BP_ontology_id = "all"; To include definitions in the Jump To drop-down, add the following variable in Javascript: var BP_include_definitions = true; In the code that you just pasted, make sure to change the path to the quick_jump.js file to point to the location where you put the file (relative to your HTML file) For example, if you put the quick_jump.js file in the same directory as your HTML file, this is the code you would use: <div id="bp_quick_jump"></div> <script type="text/javascript"> var BP_ontology_id = "PLOSTHES";</script> <script src="quick_jump.js" type="text/javascript" charset="utf-8"></script> For more help visit NCBO Widget Wiki
Form Autocomplete Fill your form fields with classes from PLOSTHES Get code	Example 1 (start typing the class name to get its full URI) Example 2 (get the ID for a class) Example 3 (get the preferred name for a class) Step 2: Follow the Instructions Download the form_complete.js file and put it on your server. In the header for the page where you want the form field, include the form_complete.js file. On your form, for the fields where you want to use the class-selection widget, specify the field's class in the following format: `bp_form_complete-{ontology_id_list}-{value}` For example, `bp_form_complete-NCIT-uri` will use NCI Thesaurus (ontology id is NCIT) and will put the class URI in the field after the user selects the class from the pull-down list. Note: In addition to single ontology ids, you can use a list: `bp_form_complete-NCIT,NCBITAXON-uri` OR use 'all' to search across all BioPortal ontologies: `bp_form_complete-all-uri` The autocomplete widget accesses ontology content from the latest version of the ontology. You can use the following parameters to select which value will be placed into the user-visible input field: `uri` put the complete URI of the class (e.g., http://localhost/plosthes.2017-1#5521 ) `shortid` put the short id of the class, as used in BioPortal (e.g., "Common_Neoplasm"); `name` put the preferred name of the class (e.g., "Common Neoplasm"); In addition to the input element you defined, there are four hidden form elements that are created and then set when a user selects a class from the list. For example, if you create a field with this code: <input type="text" name="a" class="bp_form_complete-all-uri" size="100"/> The 'name' attribute is used to create the four following fields (note how the 'a' from the name attribute is appended to the id attribute): <input type="hidden" id="a_bioportal_preferred_name"> <input type="hidden" id="a_bioportal_concept_id"> <input type="hidden" id="a_bioportal_ontology_id"> <input type="hidden" id="a_bioportal_full_id"> Additional parameters are documented on the NCBO Widget Wiki For more help visit NCBO Widget Wiki
Visualization Display a visualization for a given class in PLOSTHES Get code	Step 2: Follow the Instructions Copy the code below and paste it to your HTML page <iframe frameborder="0" src="/widgets/visualization?ontology=PLOSTHES&class=http%3A%2F%2Flocalhost%2Fplosthes.2017-1%235521&apikey=YOUR_API_KEY"></iframe> For more help visit NCBO Widget Wiki
Tree Widget Display a class tree with a search field for PLOSTHES Get code	Step 2: Follow the Instructions Copy the code below and paste it to your HTML page <link rel="stylesheet" type="text/css" href="/widgets/jquery.ncbo.tree.css"> <script src="/widgets/jquery.ncbo.tree-2.0.2.js"></script> <div id="widget_tree"></div> var widget_tree = $("#widget_tree").NCBOTree({ apikey: "YOUR_API_KEY", ontology: "PLOSTHES" }); You can also view a detailed demonstration For more help visit NCBO Widget Wiki