Protein-ligand interaction ontology

Last uploaded: November 3, 2014
Preferred Name

Van_der_Waals_interaction
Synonyms
ID

http://www.semanticweb.org/ontologies/2010/3/Ontology1271664172453.owl#Van_der_Waals_interaction

formula

VDW interactions based on interactions between induced dipoles. The potential resulting from these attractive and repulsive interactions is called the Lennard-Jones potential and is described by the following equation: V(r)= A/r6 +B/r12 A - constant B - constant 1/r12 - term describes the short range repulsive potential due to the distortion of the electron clouds at small separations. (r12 means that r is in the power of 12) 1/ r6 - term describes the long--range attractive tail of the potential between two particles. (r6 means r in the power of 6)

isDefinedBy

A weak attractive force between atoms or nonpolar molecules caused by an instantaneous dipole moment of one atom or molecule that induces a similar temporary dipole moment in adjacent atoms or molecules. The origin of van der Waals dispersion forces: temporary fluctuating dipoles.

prefixIRI

Ontology1271664172453:Van_der_Waals_interaction

prefLabel

Van_der_Waals_interaction

Reference

http://medical-dictionary.thefreedictionary.com/Van+der+Waals+interactions http://polymer.bu.edu/Wasser/robert/work/node8.html http://www.chemguide.co.uk/atoms/bonding/vdw.html

Synonym

van der Waals interaction van der Waals interactions VDW interaction VDW interactions van der Waals dispersion interactions van der Waals dispersion interaction steric interaction steric interactions dispersion interaction dispersion interactions

subClassOf

http://www.semanticweb.org/ontologies/2010/3/Ontology1271664172453.owl#Non_bonded_interaction

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