Link to this page
Protein-ligand interaction ontology
Last uploaded:
November 3, 2014
Jump to:
Preferred Name | Hydrogen_bonding | |
Synonyms |
|
|
ID |
http://www.semanticweb.org/ontologies/2010/3/Ontology1271664172453.owl#Hydrogen_bonding |
|
isDefinedBy |
Strong intermolecular forces produced by the attraction of a hydrogen atom, already covalently bonded to one electronegative atom, to a second electronegative atom of the same molecule or an adjacent molecule; these bonds are found in compounds containing strong electronegative atoms such as fluorine, oxygen, nitrogen.
The energy of a hydrogen bond lies in between the energies of covalent bonds and Vander Waals interactions, and is of the order of 2-10 kcal mol-1.
The strength of the hydrogen bond is dependent on the distance between the donor and acceptor atoms, which in turn is dependent on their electronegativities. The standard hydrogen bond between the donor and acceptor atoms is of the order of 2.6Å - 3.5Å, with the optimum at 2.8Å. Distances may be less accurate at low resolution.
The highest bonding energy for the hydrogen bond is obtained, when the two negative charges are approximately in line with the positive charge inbetween (O...H-O in water, O...H-N in the oxygen amide hydrogen bond). Deviations from linearity will reduce the bonding energy rapidly. It follows that the "best" hydrogen bond is "close" to linear.
|
|
prefixIRI |
Ontology1271664172453:Hydrogen_bonding
|
|
prefLabel |
Hydrogen_bonding
|
|
Reference | ||
software |
MarvinSketch is an advanced, Java based chemical editor for drawing chemical structures, queries and reactions.
http://www.chemaxon.com/marvin/sketch/index.php
In this site go to Tools section after drawing the molecular structure:
Other(H bond donor/ Hbond acceptor)
|
|
Synonym |
hydrogen bonding
H-bonds
H-bond
hydrogen-bonding interaction
hydrogen bond interaction
hydrogen bond interactions
hydrogen-bonded interaction
hydrogen-bonded interactions
hydrogen bonds
hydrogen bond
|
|
subClassOf |
http://www.semanticweb.org/ontologies/2010/3/Ontology1271664172453.owl#Non_bonded_interaction |
Add comment
Delete | Subject | Author | Type | Created |
---|---|---|---|---|
No notes to display |
Create mapping