Prostate Cancer Ontology - Hormonal therapy - Classes | NCBO BioPortal

Prostate Cancer Ontology

Last uploaded: June 6, 2023

Details

Acronym	PCAO
Visibility	Public
Description	Here, we introduce the Prostate cancer ontology (PCaO) as a comprehensive semantic framework covering the whole breadth of the PCa’s knowledge domain. This ontology with a subclass-based taxonomic hierarchy not only covers the broad spectrum of major biomedical concepts from molecular to clinical features of the disease, but also the different views on disease features held by molecular biologists, clinicians and drug developers. PCaO organized under three biological viewpoints, i.e., epidemiology, diagnosis, and treatment. Note: The prostate cancer ontology version 1.0 (PCAO 1.0) was published by Hua Min in 2009 (PMID: 19497389).
Status	Beta
Format	OWL
Contact	Chunjiang Yu, 743434289@qq.com Bairong Shen, bairong.shen@scu.edu.cn Qiang Wei , weiqiang933@126.com
Categories	Health, Human

Version	Released	Uploaded	Downloads
2.0 (Parsed, Indexed, Metrics, Annotator)	06/07/2023	06/06/2023	OWL \| CSV \| RDF/XML \| Diff
1.0 (Archived)	06/03/2019	06/03/2019	OWL

No views of PCAO available

Classes	633
Individuals	0
Properties	33
Maximum depth	7
Maximum number of children	53
Average number of children	4
Classes with a single child	20
Classes with more than 25 children	2
Classes with no definition	15

No projects using PCAO

Id	http://www.semanticweb.org/ontologies/2018/1/ProstateCancer.owl#Hormonal_Therapy http://www.semanticweb.org/ontologies/2018/1/ProstateCancer.owl#Hormonal_Therapy
Preferred Name	Hormonal therapy
Definitions	Definition: Various treatment modalities that produce the desired therapeutic effect by means of change of hormone/hormones level. CTEP Definition: Cancer therapy, which incorporates hormonal manipulation (e.g., tamoxifen, androgen deprivation). NCI-GLOSS Definition: Treatment that adds, blocks, or removes hormones. For certain conditions (such as diabetes or menopause), hormones are given to adjust low hormone levels. To slow or stop the growth of certain cancers (such as prostate and breast cancer), synthetic hormones or other drugs may be given to block the body's natural hormones. Sometimes surgery is needed to remove the gland that makes a certain hormone.
Type	http://www.w3.org/2002/07/owl#Class

definition	Definition: Various treatment modalities that produce the desired therapeutic effect by means of change of hormone/hormones level. CTEP Definition: Cancer therapy, which incorporates hormonal manipulation (e.g., tamoxifen, androgen deprivation). NCI-GLOSS Definition: Treatment that adds, blocks, or removes hormones. For certain conditions (such as diabetes or menopause), hormones are given to adjust low hormone levels. To slow or stop the growth of certain cancers (such as prostate and breast cancer), synthetic hormones or other drugs may be given to block the body's natural hormones. Sometimes surgery is needed to remove the gland that makes a certain hormone.
label	Hormonal therapy
prefLabel	Hormonal therapy
synonyms	Chemotherapy-Hormones/Steroids Endocrine Therapy endocrine therapy Hormonal hormonal therapy Hormonal Therapy Hormonal therapy Hormone Therapy hormone therapy hormone treatment Hormones
URL	https://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&ns=ncit&code=C15445
prefixIRI	ProstateCancer:Hormonal_Therapy
subClassOf	http://www.semanticweb.org/ontologies/2018/1/ProstateCancer.owl#Post-treatment_quality_of_life_in_patients_with_localised_prostate_cancer
type	http://www.w3.org/2002/07/owl#Class

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Add NCBO Web Widgets to your site for PCAO

Widget type	Widget demonstration
Jump To Type a class name from PCAO and jump to it in BioPortal Get code	Step 2: Follow the Instructions Download the quick_jump.js file and put it on your server Copy the code below and paste it to your HTML page Note: If you would like to use Quick Jump across multiple ontologies: You can enter a comma-separated list of ontology ids: var BP_ontology_id = "NCIt,SNOMEDCT"; You can set the variable to 'all' to search all ontologies in BioPortal: var BP_ontology_id = "all"; To include definitions in the Jump To drop-down, add the following variable in Javascript: var BP_include_definitions = true; In the code that you just pasted, make sure to change the path to the quick_jump.js file to point to the location where you put the file (relative to your HTML file) For example, if you put the quick_jump.js file in the same directory as your HTML file, this is the code you would use: <div id="bp_quick_jump"></div> <script type="text/javascript"> var BP_ontology_id = "PCAO";</script> <script src="quick_jump.js" type="text/javascript" charset="utf-8"></script> For more help visit NCBO Widget Wiki
Form Autocomplete Fill your form fields with classes from PCAO Get code	Example 1 (start typing the class name to get its full URI) Example 2 (get the ID for a class) Example 3 (get the preferred name for a class) Step 2: Follow the Instructions Download the form_complete.js file and put it on your server. In the header for the page where you want the form field, include the form_complete.js file. On your form, for the fields where you want to use the class-selection widget, specify the field's class in the following format: `bp_form_complete-{ontology_id_list}-{value}` For example, `bp_form_complete-NCIT-uri` will use NCI Thesaurus (ontology id is NCIT) and will put the class URI in the field after the user selects the class from the pull-down list. Note: In addition to single ontology ids, you can use a list: `bp_form_complete-NCIT,NCBITAXON-uri` OR use 'all' to search across all BioPortal ontologies: `bp_form_complete-all-uri` The autocomplete widget accesses ontology content from the latest version of the ontology. You can use the following parameters to select which value will be placed into the user-visible input field: `uri` put the complete URI of the class (e.g., http://www.semanticweb.org/ontologies/2018/1/ProstateCancer.owl#Estramustine ) `shortid` put the short id of the class, as used in BioPortal (e.g., "Common_Neoplasm"); `name` put the preferred name of the class (e.g., "Common Neoplasm"); In addition to the input element you defined, there are four hidden form elements that are created and then set when a user selects a class from the list. For example, if you create a field with this code: <input type="text" name="a" class="bp_form_complete-all-uri" size="100"/> The 'name' attribute is used to create the four following fields (note how the 'a' from the name attribute is appended to the id attribute): <input type="hidden" id="a_bioportal_preferred_name"> <input type="hidden" id="a_bioportal_concept_id"> <input type="hidden" id="a_bioportal_ontology_id"> <input type="hidden" id="a_bioportal_full_id"> Additional parameters are documented on the NCBO Widget Wiki For more help visit NCBO Widget Wiki
Visualization Display a visualization for a given class in PCAO Get code	Step 2: Follow the Instructions Copy the code below and paste it to your HTML page <iframe frameborder="0" src="/widgets/visualization?ontology=PCAO&class=http%3A%2F%2Fwww.semanticweb.org%2Fontologies%2F2018%2F1%2FProstateCancer.owl%23Estramustine&apikey=YOUR_API_KEY"></iframe> For more help visit NCBO Widget Wiki
Tree Widget Display a class tree with a search field for PCAO Get code	Step 2: Follow the Instructions Copy the code below and paste it to your HTML page <link rel="stylesheet" type="text/css" href="/widgets/jquery.ncbo.tree.css"> <script src="/widgets/jquery.ncbo.tree-2.0.2.js"></script> <div id="widget_tree"></div> var widget_tree = $("#widget_tree").NCBOTree({ apikey: "YOUR_API_KEY", ontology: "PCAO" }); You can also view a detailed demonstration For more help visit NCBO Widget Wiki