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Anatomic Pathology Lexicon

Last uploaded: January 22, 2013
Details
Acronym PATHLEX
Visibility Public
Description PathLex, a comprehensive lexicon—a unified language of anatomic pathology terms—for standardized indexing and retrieval of anatomic pathology information resources.
Status Beta
Format OWL
Contact Christel Daniel, christel.daniel@crc.jussieu.fr
Categories Anatomy, Health, Taxonomic Classification, Vocabularies
Submissions
Version Released Uploaded Downloads
1.2 (Parsed, Indexed, Metrics, Annotator) 01/22/2013 01/22/2013 OWL | CSV | RDF/XML | Diff
1.1 (Archived) 01/22/2013 01/22/2013 OWL
1 (Archived) 01/22/2013 01/22/2013 OWL
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Metrics
Classes 1,786
Individuals 0
Properties 0
Maximum depth 4
Maximum number of children 1,522
Average number of children 28
Classes with a single child 3
Classes with more than 25 children 1
Classes with no definition 11
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Id http://www.semanticweb.org/david/ontologies/2013/0/pathLex.owl#1.3.6.1.4.1.19376.1.8.2.1.2150
http://www.semanticweb.org/david/ontologies/2013/0/pathLex.owl#1.3.6.1.4.1.19376.1.8.2.1.2150
Preferred Name

Duodenum
Definitions
Pancreas-Specimen-Target site-Duodenum
Type http://www.w3.org/2002/07/owl#Class

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Ontology Mappings
A comprehensive ontology of flaps in reconstructive surgery 42
A formal representation of the knowledge within the domain of Isotopes for Food Science 3
AGRonomy Ontology 1
Alzheimer Disease Map Ontology 3
Alzheimer's Disease Ontology 5
Amino Acid Ontology 4
An ontology of core ecological entities 1
Anatomic Ontology for Human Lung Maturation 1
Anatomic Ontology for Mouse Lung Maturation 2
Anatomical Entity Ontology 1
APA Treatment Cluster 1
Artificial Intelligence Rheumatology Consultant System Ontology 1
Assessment of Indian Economy During Covid-19 16
Asthma Ontology 4
Atlas Ontology Model 6
Autism DSM-ADI-R ontology 2
Autism Spectrum Disorder Phenotype Ontology 1
Beta Cell Genomics Ontology 16
BIBFRAME 2.0 18
Bilingual Ontology of Alzheimer's Disease and Related Diseases 11
BioAssay Ontology 78
Biological and Environmental Research Ontology 231
Biological Observation Matrix Ontology 4
Biological Pathway Taxonomy 2
BioMedBridges Diabetes Ontology 7
Biomedical Informatics Research Network Project Lexicon 2
BioModels Ontology 56
BioTop Ontology 1
Bleeding History Phenotype Ontology 11
Bone Dysplasia Ontology 1
Botryllus schlosseri anatomy and development ontology 5
Brain Region & Cell Type terminology 2
Breast Cancer Grading Ontology 3
Breast Cancer Ontology 1
Breast Cancer Staging - 8th Edition 7
Breast Tissue Cell Lines Ontology 5
BRENDA Tissue and Enzyme Source Ontology 29
Brucellosis Ontology 2
C. elegans Gross Anatomy Vocabulary 3
C. elegans Phenotype Vocabulary 1
Cancer Care: Treatment Outcome Ontology 4
Cancer Research and Management ACGT Master Ontology 31
Cardiac Electrophysiology Ontology 1
Cardiovascular Disease Ontology 1
CEDAR Value Sets 1
Cell Culture Ontology 144
Cell Cycle Ontology 1
Cell Line Ontology 41
Cell Line Ontology [by Mahadevan] 74
Cell Ontology 26
Cephalopod Ontology 5
Cerebrotendinous Xanthomatosis Ontology 3
Chemical Entities of Biological Interest Ontology 1
Chemotherapy Toxicities Ontology 13
Children's Health Exposure Analysis Resource 5
Cigarette Smoke Exposure Ontology 169
Ciona intestinalis Anatomy and Development Ontology 6
Ciona savignyi Anatomy and Development Ontology 6
Clinical MetaData Ontology 3
Clinical Signs and Symptoms Ontology 3
Clinical smell and taste disorders 1
Coding Symbols for a Thesaurus of Adverse Reaction Terms 5
Cognitive Atlas Ontology 4
cohsi2study 2
cohsi2termsweekx 12
Coleoptera Anatomy Ontology 8
Collembola Anatomy Ontology 13
Combined Ontology for Inflammatory Diseases 13
Combined Phenotype Ontology 92
Common Diabetes Medications Ontology 1
Common Terminology Criteria for Adverse Events 1
Computational Neuroscience Ontology 1
Computational Ontology Framework for Brain Profiles 3
Computer Retrieval of Information on Scientific Projects Thesaurus 48
Context and Measurement Ontology 3
Coronavirus Infectious Disease Ontology 16
COVID-19 Ontology 7
COVID-19OntologyInPatternMedicine 7
Ctenophore Ontology 6
Culture, Race, Ethnicity and Nationality Ontology 2
DATACITE V4.4 4
Dengue Fever Ontology 3
Dependency Layered Ontology for Radiation Oncology 39
Dermatology Lexicon 44
DICOM Controlled Terminology 10
Digital Health Technologies 2
Digital medicine Outcomes Value Set (DOVeS) Ontology 106
Disease core ontology applied to Rare Diseases 13
Disorders cluster 3
Drosophila Gross Anatomy Ontology 7
Drosophila Phenotype Ontology 3
Drug Target Ontology 75
Eagle-I Research Resource Ontology 1
Early Pregnancy Ontology 15
Eligibility Feature Hierarchy 1
eLTER Controlled Lists 3
Emergency care ontology 4
EMIF-AD ontology 2
eNanoMapper 2
Environment Ontology 3
Environment Ontology for Livestock 1
Environmental conditions, treatments and exposures ontology 3
Epigenome Ontology 4
Epilepsy and Seizure Ontology 4
Epilepsy Semiology Ontology 5
Epilepsy Syndrome Seizure Ontology 3
EpilepsyOntology 4
ETHANC 4
Ethiopian OPD 1
ETHIOPIANC 4
EthiopianListOfDiseases 1
Ethnicity Ontoloy 1
Experimental Factor Ontology 144
Exposure Value Set 1
Fall Risk Management Ontology 4
Family Health History Ontology 5
Fanconi Anemia Ontology 19
Fish Ontology 6
Fission Yeast Phenotype Ontology 2
Fitbit Vocabularies 1
Flora Phenotype Ontology 5
FlyBase Controlled Vocabulary 7
FNS-Harmony 119
Foundational Model of Anatomy 42
Functional Therapeutic Chemical Classification System 2
FuTRES Ontology of Vertebrate Traits 21
Galen Ontology 55
Gazetteer 4
Gender Identity 1
Gender, Sex, and Sexual Orientation Ontology 19
Gene Expression Ontology 1
Genomic Epidemiology Application Ontology 22
Global Code Book Ontology 34
GO FAIR M4M 1
go-plus 28
GOLD Ecosystem Classification 17
Group 4-Data Science in Practice 1
Halocynthia aurantium Anatomy and Development Ontology 6
Halocynthia roretzi Anatomy and Development Ontology 6
Head and Neck Cancer - Clinical and Gene Ontology 7
Head and Neck Cancer Ontology 128
Health and Social Person-centric Ontology 4
Health Level Seven Reference Implementation Model, Version 3 21
Health Surveillance Ontology 6
Health_ontology 113
Healthcare Monitoring and Emergency Response Ontology 1
Heart Failure Ontology 2
HGNC New Releases Ontology 1
HHEAR Properties 4
Hierarchical Event Descriptors 11
Homeostasis imbalance process ontology 19
Host Pathogen Interactions Ontology 2
HuBMAP Research Attributes Value Set 1
HUGO Gene Nomenclature 1
Human Dermatological Disease Ontology 10
Human Developmental Anatomy Ontology, abstract version 1 27
Human Developmental Anatomy Ontology, abstract version 2 15
Human Developmental Anatomy Ontology, timed version 141
Human Disease Ontology 114
Human Health Exposure Analysis Resource 127
Human Phenotype Ontology 22
Human Physiology Simulation Ontology 17
Human Reference Atlas 38
Human Reference Atlas Common Coordinate Framework Ontology 31
Human-Aware Science Ontology 4
Hymenoptera Anatomy Ontology 9
Hypertension Ontology 3
IAML Medium of Performance Vocabulary 1
Influenza Ontology 1
Informed Consent Ontology 13
Integrated Ontology for Symptom Phenotype Terminologies 1
Interlinking Ontology for Biological Concepts 150
International Classification for Nursing Practice 40
International Classification of Diseases Ontology 8
International Classification of Diseases, Version 10 1
International Classification of Diseases, Version 10 - Clinical Modification 2
International Classification of Diseases, Version 9 - Clinical Modification 8
International Classification of Primary Care - 2 PLUS 17
Interview Mode 1
ISO 19115 Common Classes 1
KB_Bio_101 26
Kidney Tissue Atlas Ontology 52
Land Surface classifiers 13
Landform classifiers 4
Lepidoptera Anatomy Ontology 9
Liver Case Ontology (LiCO) 2
Loggerhead Nesting Ontology 1
Logical Observation Identifier Names and Codes 420
Macroalgae Traits Thesaurus 1
Mammalian Feeding Muscle Ontology 1
Mammalian Phenotype Ontology 72
Mapping of Drug Names and MeSH 2022 38
Mapping of Epilepsy Ontologies 6
Mass Spectrometry Ontology 5
MaterialsMine Ontology 4
Medaka Fish Anatomy and Development Ontology 6
Medical Action Ontology 33
Medical Dictionary for Regulatory Activities Terminology (MedDRA) 114
Medical image simulation 94
Medical Imaging and Diagnostic Ontology 87
Medical Subject Headings 55
MedlinePlus Health Topics 7
Melanoma Ontology 12
Menelas Project Top-Level Ontology 8
metaBUS controlled vocabulary for organizational and applied psychology research 2
Metagenome and Microbes Environmental Ontology 26
METPO 2
Microbial Typing Ontology 4
Minimal Anatomical Terminology 24
Minimal Information about any Sequence (MIxS) Controlled Vocabularies 1
Minimal Information about any Sequence Ontology 41
Minimal Standard Terminology of Digestive Endoscopy 16
Molgula occidentalis Anatomy and Development Ontology 6
Molgula occulta Anatomy and Development Ontology 6
Molgula oculata Anatomy and Development Ontology 6
Mondo Disease Ontology 106
Mosquito Gross Anatomy Ontology 4
Mouse Adult Gross Anatomy Ontology 32
Mouse gross anatomy and development, timed 33
Mouse Pathology Ontology 74
Multiple sclerosis ontology 4
Myocardial Infarction Ontology 5
Nanbyo Disease Ontology 3
National Cancer Institute Thesaurus 386
National Drug Data File 2
National Drug File - Reference Terminology 2
Natural Products Ontology 85
Neomark Oral Cancer Ontology, version 3 1
Neomark Oral Cancer Ontology, version 4 14
Neural ElectroMagnetic Ontology 6
NeuralReprogrammingOntology 4
Neuro Behavior Ontology 21
NeuroMorpho.Org brain region ontologies 1
Neuron Phenotype Ontology 25
Neuropsychological Integrative Ontology 1
Neuroscience Information Framework (NIF) Cell Ontology 8
Neuroscience Information Framework (NIF) Dysfunction Ontlogy 20
Neuroscience Information Framework (NIF) Standard Ontology 135
Neuroscience Information Framework (NIF) Subcellular Ontology 8
NIH NLM Value Sets 2
NMDC Ontology 19
Obstetric and Neonatal Ontology 14
OCD ontology 3
Ocular Immune-Mediated Inflammatory Diseases Ontology 4
OligoMetastatic Cancer Ontology 41
Online Mendelian Inheritance in Man 34
OntoFood 2
Ontology for Biobanking 27
Ontology for Biomedical Investigations 16
Ontology for MicroRNA Target 53
Ontology for Newborn Screening Follow-up and Translational Research 3
Ontology for Nutritional Epidemiology 16
Ontology for Nutritional Studies 1
Ontology for Parasite LifeCycle 4
Ontology for Representing CDM Semantics 9
Ontology for the Anatomy of the Insect SkeletoMuscular system 25
Ontology of Adverse Events 19
Ontology of Alternative Medicine, French 3
Ontology of amyotrophic lateral sclerosis, social module 6
Ontology of Amyotrophic Lateral Sclerosis, all modules 15
Ontology of Biological and Clinical Statistics 3
Ontology of Biological Attributes 62
Ontology of Cardiovascular Drug Adverse Events 14
Ontology of Chinese Medicine for Rheumatism 11
Ontology of Consumer Health Vocabulary 358
Ontology of Drug Adverse Events 18
Ontology of Host-Microbe Interactions 3
Ontology of Host-Pathogen Interactions 13
Ontology of Liver for Radiology 2
Ontology of Microbial Phenotypes 2
Ontology of Nuclear Toxicity 3
Ontology of Pneumology 20
Ontology of Precision Medicine and Investigation 1
Ontology of Risk Stratification in Mental Health 2
Ontology of Vaccine Adverse Events 1
OntoPsychia, social module 5
OPD Register Ontology 1
OPD-Ethiopia 4
Open Predictive Microbiology Ontology 1
Orphanet Rare Disease Ontology 12
Parkinson's Disease Ontology 3
Pathogen Host Interaction Phenotype Ontology 2
Pathogenic Disease Ontology 1
PatientSafetyOntology 1
PatientSafetyOntologyRevisted 1
Payment Mode 1
Pediatric Terminology 4
Phallusia fumigata Anatomy and Development Ontology 6
Phallusia mammillata Anatomy and Development Ontology 6
Pharmacogenomic Relationships Ontology 1
Phenotypic Quality Ontology 9
Physical Activity Ontology 1
Physician Data Query 14
Placental Maternal Health Conditions 2
Planarian Anatomy and Developmental Stage Ontolgoy 3
Planarian Phenotype Ontology 5
Plant Gall Ontology 3
PLOS Thesaurus 39
PMO Precision Medicine Ontology 43
Population and Community Ontology 2
Portfolio Management Application 15
Pre-eclampsia Ontology 4
Precision Medicine Ontology 11
Prostate Cancer Ontology 1
Protein Ontology 2
Provisional Cell Ontology 16
Psychology Ontology 14
Psychometric Ontology of Experiences and Measures 4
Radiation Biology Ontology 17
Radiation Oncology Ontology 47
Radiation Oncology Structures Ontology 19
Radiology Gamuts Ontology 83
Radiology Lexicon 159
Read Clinical Terminology Version 2 18
Read Codes, Clinical Terms Version 3 (CTV3) 201
RegenBase ontology 4
Regulation of Gene Expression Ontolology 1
Regulation of Transcription Ontology 1
Resource of Asian Primary Immunodeficiency Diseases (RAPID) Phenotype Ontology 2
Robert Hoehndorf Version of MeSH 140
Sample Processing and Separation Techniques Ontology 1
Santa Barbara Coastal Observation Ontology 1
Semantic Web for Earth and Environment Technology Ontology 3
Semanticscience Integrated Ontology 4
Sepsis Ontology 12
Sickle Cell Disease Ontology 4
Sleep Domain Ontology 3
SMART Protocols 4
SmartPITeS Proyect Ontology for Complex Chronic Patients 1
SNOMED CT 324
Social Insect Behavior Ontology 1
Solanaceae Phenotype Ontology 2
Space Life Sciences Ontology 2
Spatial Ontology 6
Spider Anatomy Ontology 4
Spinal Cord Injury Ontology 37
Student Health Record Ontology 1
Study Cohort Ontology 4
Suggested Ontology for Pharmacogenomics 26
Symptom Ontology 3
symptomatic treatment of multiple sclerosis ontology 2
Systematized Nomenclature of Medicine, International Version 96
Taxonomy for Rehabilitation of Knee Conditions 17
Teleost Anatomy Ontology 12
The Amphioxus Development and Anatomy Ontology 2
The Biomarker Ontology 10
The Drug-Drug Interactions Ontology 2
The Echinoderm Anatomy and Development Ontology 21
The FoodOn Food Ontology 11
The Ontology for Biomedical Investigation based Inner Ear Electrophysiology 12
The Prescription of Drugs Ontology 22
Therapeutic Antibody Ontology 1
Thesaurus for long-term ecological research, monitoring, experiments 1
Thyroid Cancer Ontology 8
Toxic Process Ontology 10
Tribolium Ontology 2
Uber Anatomy Ontology 36
URL ONTOLOGY 1
Vaccination Informed Consent Ontology 2
Vaccine Ontology 10
Vertebrate Homologous Organ Group Ontology 22
Vertebrate Skeletal Anatomy Ontology 1
Veterans Health Administration National Drug File 2
VEuPathDB Ontology 11
Viral Disease Ontology Trunk 4
VIVO Ontology for Researcher Discovery 2
VIVO-Integrated Semantic Framework 2
VODAN ANC Vocabulary 4
VODANA-COVIDTERMS 5
VODANANIGERIA 4
VODANATERMS 5
Women with Epilepsy of Child-bearing Age Ontology 1
World Health Organization (WHO) Adverse Reaction Terminology 2
Xenopus Anatomy Ontology 20
Xenopus Phenotype Ontology 23
Zebrafish Anatomy and Development Ontology 11
Zebrafish Experimental Conditions Ontology 4
Zebrafish Phenotype Ontology 42
ZonMw Generic Terms 1