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Ontology of Physics for Biology
Last uploaded:
December 10, 2022
| Acronym | OPB |
| Visibility | Public |
| Description | The OPB is a reference ontology of classical physics and thermodynamics as applied to the dynamics of biological systems. It is designed to encompass the multiple structural scales (atoms to organisms) and multiple physical domains (fluid dynamics, chemical kinetics, particle diffusion, etc.) that are encountered in the study and analysis of biological organisms. |
| Status | Beta |
| Format | OWL |
| Contact | Daniel L. Cook, dcook@u.washington.edu Maxwell L. Neal, maxneal@gmail.com |
| Categories | Biological Process, Biomedical Resources, Chemical, Phenotype, Physicochemical |
| Version | Released | Uploaded | Downloads |
|---|---|---|---|
| 1.2 (Parsed, Indexed, Metrics, Annotator) | 01/09/2023 | 12/10/2022 | OWL | CSV | RDF/XML | Diff |
| 1.1 (Archived) | 03/24/2022 | 05/24/2022 | OWL | Diff |
| 1.07 (Archived) | 07/19/2019 | 07/19/2019 | OWL | Diff |
| 1.07 (Archived) | 07/16/2019 | 07/16/2019 | OWL | Diff |
| 1.06 (Archived) | 03/15/2018 | 03/15/2018 | OWL | Diff |
| 1.05 (Archived) | 02/18/2015 | 09/05/2017 | OWL | Diff |
| 1.05 (Archived) | 02/18/2015 | 09/05/2017 | OWL |
| 1.05-thermo (Archived) | 02/18/2015 | 06/11/2017 | OWL | Diff |
| 1.04 (Archived) | 02/18/2015 | 02/18/2015 | OWL | Diff |
| 1.03 (Archived) | 02/01/2015 | 02/12/2015 | OWL | Diff |
| 1.0 (Archived) | 02/01/2015 | 02/01/2015 | OWL | Diff |
| 0.960 (Archived) | 07/13/2012 | 07/13/2012 | OWL | Diff |
| 0.950 (Archived) | 12/27/2011 | 12/27/2011 | OWL | Diff |
| 0.930 (Archived) | 04/27/2011 | 04/27/2011 | OWL | Diff |
| 0.920 (Archived) | 12/01/2010 | 12/01/2010 | OWL | Diff |
| 0.910 (Archived) | 10/06/2010 | 10/06/2010 | OWL |
| 0.905 (Archived) | 02/10/2010 | 02/10/2010 | OWL |
| 0.8 (Archived) | 12/07/2008 | 08/03/2009 | OWL |
| more... | |||
No views of OPB available
| Classes | 858 |
| Individuals | 0 |
| Properties | 69 |
| Maximum depth | 12 |
| Maximum number of children | 18 |
| Average number of children | 3 |
| Classes with a single child | 7 |
| Classes with more than 25 children | 0 |
| Classes with no definition | 299 |
Jump to:
| Id | http://bhi.washington.edu/OPB#OPB_01067
http://bhi.washington.edu/OPB#OPB_01067
|
|---|---|
| Preferred Name | Chemical structure |
| Definitions |
A dyamical stucture that can participate in chemical reaction processes.
|
| Type | http://www.w3.org/2002/07/owl#Class |
All Properties
| label | Chemical structure
|
|---|---|
| comment | A dyamical stucture that can participate in chemical reaction processes.
|
| prefLabel | Chemical structure
|
| synonym |
molecular species
chemical substrate
chemical product
chemical reactant
compound
reactant
substrate
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| discussion | As discrete structures, OPB:Chemical substance classes are intended to represent single discrete atomic or molecular scale structures for purposes of analyzing the molecular dynamic processes by which they interact and deform. Chemical reactions involving innumerable (e.g., molar quantities) atoms and molecules are modeled using the OPB:Portions of chemical reactant class.
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| prefixIRI | OPB:OPB_01067
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| subClassOf | |
| type |
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