Ontology of Genes and Genomes

Last uploaded: December 2, 2016

Details

Acronym	OGG
Visibility	Public
Description	OGG is a biological ontology in the area of genes and genomes. OGG uses the Basic Formal Ontology (BFO) as its upper level ontology. This OGG document contains the genes and genomes of a list of selected organisms, including human, two viruses (HIV and influenza virus), and bacteria (B. melitensis strain 16M, E. coli strain K-12 substrain MG1655, M. tuberculosis strain H37Rv, and P. aeruginosa strain PAO1). More OGG information for other organisms (e.g., mouse, zebrafish, fruit fly, yeast, etc.) may be found in other OGG subsets.
Status	Production
Format	OWL
Contact	Oliver He, yongqunh@med.umich.edu
Categories	Gene Product, Genomic and Proteomic, Human
Groups	OBO Foundry

Version	Released	Uploaded	Downloads
Vision Release: 1.0.59 (Parsed, Indexed, Metrics, Annotator)	12/02/2016	12/02/2016	OWL \| CSV \| RDF/XML \| Diff
Vision Release: 1.0.59 (Archived)	12/02/2016	09/01/2014	OWL \| Diff
Vision Release: 1.0.42 (Archived)	05/19/2014	05/22/2014	OWL

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Classes	69,689
Individuals	0
Properties	81
Maximum depth	11
Maximum number of children	20,710
Average number of children	801
Classes with a single child	13
Classes with more than 25 children	20
Classes with no definition	50,802

No projects using OGG

Id	http://purl.obolibrary.org/obo/OGG_3000064843 http://purl.obolibrary.org/obo/OGG_3000064843
Preferred Name	ISL2
Definitions	Other designations: ISL2 transcription factor, LIM/homeodomain, (islet-2)\|insulin gene enhancer protein ISL-2\|islet-2
Type	http://www.w3.org/2002/07/owl#Class

label	ISL2
comment	Other designations: ISL2 transcription factor, LIM/homeodomain, (islet-2)\|insulin gene enhancer protein ISL-2\|islet-2
prefLabel	ISL2
description	ISL LIM homeobox 2
has PubMed association	PMID: 9452425; 12477932; 14702039; 15302935; 15489334; 17091338; 21139048; 21145461; 21190559; 21697133
term editor	Bin Zhao, Yue Liu, Oliver He
definition source	WEB: http://www.ncbi.nlm.nih.gov/gene
prefixIRI	OGG:3000064843
subClassOf	http://purl.obolibrary.org/obo/OGG_2060009606
type of gene	protein-coding
nomenclature status	Official from a nomenclature committee
organism NCBITaxon ID	9606
chromosome ID of gene	15
type	http://www.w3.org/2002/07/owl#Class
gene map location	15q23
symbol from nomenclature authority	ISL2
full name from nomenclature authority	ISL LIM homeobox 2
NCBI GeneID	64843
modification date	20140408
has GO association	GO_0003677 (EC: ISS, PMID: 17091338); GO_0003700 (EC: IEA); GO_0005634 (EC: IC, PMID: 17091338); GO_0008270 (EC: IEA); GO_0021520 (EC: IEA); GO_0021524 (EC: IEA); GO_0031290 (EC: IEA); GO_0043565 (EC: IEA); GO_0045665 (EC: IEA); GO_0048666 (EC: TAS, PMID: 9452425); GO_0048935 (EC: TAS)

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