Ontology of Adverse Events

Last uploaded: September 3, 2022
Preferred Name

brainstem

Synonyms

truncus encephali

brain stem

truncus encephalicus

lamina medullaris accessoria

lamina medullaris incompleta pallidi

lamella pallidi incompleta

lamina pallidi incompleta

accessory medullary lamina of pallidum

Definitions

'brainstem' is a loose term that sometimes refers to the ventral parts o the brain except for any part of the telencephalon - sometimes it includes the diencephalon or subpallial telencephalon structures (ISBN10:0471888893). Here we use it in a more restriced sense, to include only the medulla oblongata, pons (when present) and the midbrain tegmentum (following the ZFA definitions). Stalk-like part of the brain that includes amongst its parts the medulla oblongata of the hindbrain and the tegmentum of the midbrain[ZFA,MP,generalized].

ID

http://purl.obolibrary.org/obo/UBERON_0002298

comment

'brainstem' is a loose term that sometimes refers to the ventral parts o the brain except for any part of the telencephalon - sometimes it includes the diencephalon or subpallial telencephalon structures (ISBN10:0471888893). Here we use it in a more restriced sense, to include only the medulla oblongata, pons (when present) and the midbrain tegmentum (following the ZFA definitions).

continuous_with

http://purl.obolibrary.org/obo/UBERON_0002240

contributes to morphology of

http://purl.obolibrary.org/obo/UBERON_0000955

database_cross_reference

http://www.snomedbrowser.com/Codes/Details/180925009

http://en.wikipedia.org/wiki/Brainstem

http://linkedlifedata.com/resource/umls/id/C0006121

http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=236

http://uri.neuinfo.org/nif/nifstd/birnlex_1565

http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C12441

BAMS:BS

TAO:0002156

UMLS:C0006121

http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=236

BTO:0000146

CALOHA:TS-0093

MBA:343

MA:0000169

EV:0100241

FMA:79876

EMAPA:32678

ZFA:0001707

EFO:0001962

VHOG:0001457

MESH:D001933

definition

Stalk-like part of the brain that includes amongst its parts the medulla oblongata of the hindbrain and the tegmentum of the midbrain[ZFA,MP,generalized].

depicted_by

http://upload.wikimedia.org/wikipedia/commons/b/b7/Gray719.png

external_definition

the stalk-like part of the brain that comprises the midbrain (aka mesencephalon), the pons (aka pons Varolii), and the medulla oblongata, and connects the cerebral hemispheres with the cervical spinal cord[MP]

Multi-tissue structure that has as its parts the medulla oblongata of the hindbrain and the tegmentum of the midbrain[ZFA,adopted][ZFA:0001707].

Multi-tissue structure that has as its parts the medulla oblongata of the hindbrain and the tegmentum of the midbrain.[TAO]

has part

http://purl.obolibrary.org/obo/UBERON_0001896

http://purl.obolibrary.org/obo/UBERON_0001943

has_exact_synonym

truncus encephali

brain stem

has_obo_namespace

uberon

has_related_synonym

truncus encephalicus

lamina medullaris accessoria

lamina medullaris incompleta pallidi

lamella pallidi incompleta

lamina pallidi incompleta

accessory medullary lamina of pallidum

id

UBERON:0002298

imported from

http://purl.obolibrary.org/obo/uberon.owl

in_subset

http://purl.obolibrary.org/obo/uberon#uberon_slim

http://purl.obolibrary.org/obo/uberon/core#efo_slim

http://purl.obolibrary.org/obo/uberon/core#vertebrate_core

http://purl.obolibrary.org/obo/uberon#loose_concept

http://purl.obolibrary.org/obo/uberon#vertebrate_core

http://purl.obolibrary.org/obo/uberon/core#pheno_slim

http://purl.obolibrary.org/obo/uberon/core#uberon_slim

label

brainstem

notation

UBERON:0002298

part_of

http://purl.obolibrary.org/obo/UBERON_0000955

prefLabel

brainstem

treeView

http://purl.obolibrary.org/obo/UBERON_0000955

spatially_disjoint_from

http://purl.obolibrary.org/obo/UBERON_0001890

http://purl.obolibrary.org/obo/UBERON_0002037

http://purl.obolibrary.org/obo/UBERON_0002314

subClassOf

http://purl.obolibrary.org/obo/UBERON_0002616

http://purl.obolibrary.org/obo/UBERON_0010314

Delete Subject Author Type Created
No notes to display
Create mapping

Delete Mapping To Ontology Source
http://purl.obolibrary.org/obo/UBERON_0002298 UBERON SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 OBA SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 NPOKB SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 CL SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 EFO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 RBO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 CLO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 OVAE SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 OHPI SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 FOVT SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 OCMR SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 HOIP SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 DOID SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 XPO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 PCL SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 PATO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 NIFDYS SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 EPIO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 BERO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 NBO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 HHEAR SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 OBA SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 ODAE SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 UPHENO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 OCVDAE SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 NIFSTD SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 KTAO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 MAXO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 CCF SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 GO-PLUS SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 FNS-H SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 AISM SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 NMDCO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0002298 UBERON LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 OBA LOOM
http://neuromorpho.org/ontologies/vertebrateH.owl#NMOBr_176 NMOBR LOOM
http://purl.obolibrary.org/obo/VHOG_0001457 VHOG LOOM
http://www.semanticweb.org/rjyy/ontologies/2015/5/ESSO#Brain_Stem ESSO LOOM
http://www.semanticweb.org/rjyy/ontologies/2015/5/ESSO#Brain_Stem MEPO LOOM
http://purl.bioontology.org/ontology/LNC/LP207337-9 LOINC LOOM
http://www.semanticweb.org/ontologies/2009/3/ontoDPN.owl#OPPIO_a000307 EPO LOOM
http://scai.fraunhofer.de/AlzheimerOntology#brainstem ADO LOOM
http://scai.fraunhofer.de/AlzheimerOntology#brainstem NIO LOOM
http://purl.obolibrary.org/obo/EMAPA_32678 EMAPA LOOM
http://ontology.apa.org/apaonto/termsonlyOUT%20(5).owl#Brain_Stem APANEUROCLUSTER LOOM
http://ontology.apa.org/apaonto/termsonlyOUT%20(5).owl#Brain_Stem APAONTO LOOM
http://uri.interlex.org/fsl/uris/atlases/HarvardOxford-Subcortical/labels/7 NIFSTD LOOM
http://api.brain-map.org/api/v2/data/Structure/343 NPOKB LOOM
http://api.brain-map.org/api/v2/data/Structure/343 NIFSTD LOOM
http://www.semanticweb.org/ontologies/STO.owl#b50fc8_8c7a_43cd_8dfc_e287c4b7c010 STO-DRAFT LOOM
http://www.semanticweb.org/ontologies/STO.owl#b50fc8_8c7a_43cd_8dfc_e287c4b7c010 CVAO LOOM
http://purl.bioontology.org/ontology/RCD/7N005 RCD LOOM
http://www.owl-ontologies.com/OntologyXCT.owl#Brainstem CTX LOOM
http://sbmi.uth.tmc.edu/ontology/ochv#C0006121 OCHV LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#D001933 RH-MESH LOOM
http://purl.obolibrary.org/obo/MA_0000169 MA LOOM
http://purl.org/obo/owlapi/fma#FMA_79876 BIOMODELS LOOM
http://www.projecthalo.com/aura#Brainstem AURA LOOM
http://purl.obolibrary.org/obo/BTO_0000146 DTO LOOM
http://purl.obolibrary.org/obo/BTO_0000146 BTO LOOM
http://sbmi.uth.tmc.edu/ontology/ochv#2142 OCHV LOOM
http://purl.org/sig/ont/fma/fma79876 FMA LOOM
http://purl.org/sig/ont/fma/fma79876 ROO LOOM
http://purl.bioontology.org/ontology/SNMI/T-A2050 SNMI LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 NPOKB LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 CL LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 EFO LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 RBO LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 CLO LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 OVAE LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 OHPI LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 FOVT LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 OCMR LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 HOIP LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 DOID LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 XPO LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 PCL LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 PATO LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 NIFDYS LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 EPIO LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 NBO LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 HHEAR LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 OBA LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 ODAE LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 UPHENO LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 OCVDAE LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 NIFSTD LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 KTAO LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 MAXO LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 CCF LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 GO-PLUS LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 FNS-H LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 AISM LOOM
http://purl.obolibrary.org/obo/UBERON_0002298 NMDCO LOOM
http://purl.bioontology.org/ontology/CSP/0476-5401 CRISP LOOM
http://www.co-ode.org/ontologies/galen#Brainstem GALEN LOOM
http://www.purl.org/NDDO/NDDO_20001006 NDDO LOOM
http://purl.obolibrary.org/obo/FMA_79876 NIO LOOM
urn:absolute:RadiationOncologyStructuresOntology#Brainstem ROS LOOM
http://www.semanticweb.org/ontologies/2012/11/abnormalities.owl#phenodb:1813 IFAR LOOM
http://www.ustb.edu.cn/thesauri/tocr/v1/data#C571346494750191618 ACVD_ONTOLOGY LOOM
http://purl.obolibrary.org/obo/ZFA_0001707 ZFA LOOM
http://purl.obolibrary.org/obo/ZFA_0001707 UPHENO LOOM
http://purl.obolibrary.org/obo/ZFA_0001707 ZP LOOM
http://purl.jp/bio/4/id/200906076160033323 IOBC LOOM
http://regenbase.org/ontology#RB_0000505 RB LOOM
http://purl.obolibrary.org/obo/NCIT_C12441 BERO LOOM
http://scai.fraunhofer.de/MSOntology#Brainstem MSO LOOM
http://purl.obolibrary.org/obo/TAO_0002156 TAO LOOM
http://mouse.brain-map.org/atlas/index.html#BS ABA-AMB LOOM
http://www.ifomis.org/acgt/1.0#Brainstem ACGT-MO LOOM
http://bioontology.org/projects/ontologies/birnlex#birnlex_1565 BIRNLEX LOOM
http://purl.obolibrary.org/obo/OMIT_0003289 OMIT LOOM
http://uri.neuinfo.org/nif/nifstd/birnlex_1565 NIFSTD LOOM
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#Brain_Stem SYN LOOM
http://www.semanticweb.org/ontologies/2009/9/Ontology1255357986125.owl#Brainstem BRCT LOOM
http://radlex.org/RID/RID6677 RADLEX LOOM
http://localhost/plosthes.2017-1#1507 PLOSTHES LOOM
http://uri.interlex.org/waxholm/uris/sd/labels/47 NIFSTD LOOM
http://doe-generated-ontology.com/OntoAD#C0006121 ONTOAD LOOM
http://purl.bioontology.org/ontology/MESH/D001933 MESH LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#A08.186.211.132 RH-MESH LOOM
http://id.nlm.nih.gov/mesh/D001933 MDM LOOM
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C12441 NCIT LOOM