Preferred Name

brainstem

Synonyms

accessory medullary lamina of pallidum

lamina medullaris incompleta pallidi

lamella pallidi incompleta

brain stem

truncus encephalicus

lamina pallidi incompleta

lamina medullaris accessoria

truncus encephali

Definitions

Stalk-like part of the brain that includes amongst its parts the medulla oblongata of the hindbrain and the tegmentum of the midbrain[ZFA,MP,generalized]. 'brainstem' is a loose term that sometimes refers to the ventral parts o the brain except for any part of the telencephalon - sometimes it includes the diencephalon or subpallial telencephalon structures (ISBN:0471888893). Here we use it in a more restriced sense, to include only the medulla oblongata, pons (when present) and the midbrain tegmentum (following the ZFA definitions).

ID

http://purl.obolibrary.org/obo/UBERON_0002298

comment

'brainstem' is a loose term that sometimes refers to the ventral parts o the brain except for any part of the telencephalon - sometimes it includes the diencephalon or subpallial telencephalon structures (ISBN:0471888893). Here we use it in a more restriced sense, to include only the medulla oblongata, pons (when present) and the midbrain tegmentum (following the ZFA definitions).

continuous_with

http://purl.obolibrary.org/obo/UBERON_0002240

contributes to morphology of

http://purl.obolibrary.org/obo/UBERON_0000955

database_cross_reference

ZFA:0001707

MESH:D001933

BIRNLEX:1565

BAMS:BS

EFO:0001962

TAO:0002156

http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=236

UMLS:C0006121

EMAPA:32678

NCIT:C12441

FMA:79876

MA:0000169

CALOHA:TS-0093

VHOG:0001457

EV:0100241

MBA:343

BTO:0000146

http://www.snomedbrowser.com/Codes/Details/180925009

http://en.wikipedia.org/wiki/Brainstem

http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=236

http://linkedlifedata.com/resource/umls/id/C0006121

delineatedBy

http://api.brain-map.org/api/v2/data/Structure/343

depicted by

http://upload.wikimedia.org/wikipedia/commons/b/b7/Gray719.png

external_definition

Multi-tissue structure that has as its parts the medulla oblongata of the hindbrain and the tegmentum of the midbrain[ZFA,adopted][ZFA:0001707].

the stalk-like part of the brain that comprises the midbrain (aka mesencephalon), the pons (aka pons Varolii), and the medulla oblongata, and connects the cerebral hemispheres with the cervical spinal cord[MP]

Multi-tissue structure that has as its parts the medulla oblongata of the hindbrain and the tegmentum of the midbrain.[TAO]

has_exact_synonym

brain stem

truncus encephali

has_obo_namespace

uberon

has_related_synonym

accessory medullary lamina of pallidum

lamina medullaris incompleta pallidi

lamella pallidi incompleta

truncus encephalicus

lamina pallidi incompleta

lamina medullaris accessoria

id

UBERON:0002298

in_subset

http://purl.obolibrary.org/obo/uberon/core#uberon_slim

http://purl.obolibrary.org/obo/uberon/core#pheno_slim

http://purl.obolibrary.org/obo/uberon/core#efo_slim

http://purl.obolibrary.org/obo/uberon/core#vertebrate_core

label

brainstem

notation

UBERON:0002298

prefixIRI

UBERON:0002298

prefLabel

brainstem

textual definition

Stalk-like part of the brain that includes amongst its parts the medulla oblongata of the hindbrain and the tegmentum of the midbrain[ZFA,MP,generalized].

subClassOf

http://purl.obolibrary.org/obo/UBERON_0002616

http://purl.obolibrary.org/obo/UBERON_0010314

has_part

http://purl.obolibrary.org/obo/UBERON_0001943

http://purl.obolibrary.org/obo/UBERON_0001896

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Delete Mapping To Ontology Source
http://www.purl.org/NDDO/NDDO_20001006 NDDO LOOM
http://www.projecthalo.com/aura#Brainstem AURA LOOM
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http://purl.bioontology.org/ontology/SNMI/T-A2050 SNMI LOOM
urn:absolute:RadiationOncologyStructuresOntology#Brainstem ROS LOOM
http://scai.fraunhofer.de/AlzheimerOntology#brainstem ADO LOOM
http://localhost/plosthes.2017-1#1507 PLOSTHES LOOM
http://www.semanticweb.org/ontologies/2012/11/abnormalities.owl#phenodb:1813 IFAR LOOM
http://www.semanticweb.org/pallabi.d/ontologies/2014/2/untitled-ontology-11#BrainStem MCCL LOOM
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http://phenomebrowser.net/ontologies/mesh/mesh.owl#A08.186.211.132 RH-MESH LOOM
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http://purl.obolibrary.org/obo/ZFA_0001707 ZFA LOOM
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http://www.ifomis.org/acgt/1.0#Brainstem ACGT-MO LOOM
http://ontology.apa.org/apaonto/termsonlyOUT%20(5).owl#Brain_Stem APANEUROCLUSTER LOOM
http://ontology.apa.org/apaonto/termsonlyOUT%20(5).owl#Brain_Stem APAONTO LOOM
http://doe-generated-ontology.com/OntoAD#C0006121 ONTOAD LOOM
http://purl.obolibrary.org/obo/EMAPA_32678 EMAPA LOOM
https://bioportal.bioontology.org/ontologies/ICD-O-3-T/C71.7 ICD-O-3-T LOOM
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