The MOSAiC Ontology - Event - Classes | NCBO BioPortal

The MOSAiC Ontology

Last uploaded: September 10, 2021

Id	https://schema.org/Event https://schema.org/Event
Preferred Name	Event
Definitions	"Event" is ambiguous in the context of the MOSAiC Expedition, potentially indicating many different types of activities, places, or products, as described in the extract above taken verbatim from the Pangaea website. In this Ontology, "Event" is being presented in the way it was most typically used on the MOSAiC data archive accessed through the Pangaea website-- as a "label" for a Sampling Event, involving the collection of one type of data collected by a specific type of "Method/Device", that is described by the "Device Long Name" and an associated "Device Short Name". In the PROVO ontology, a Method/Device is characterized as a System, that includes either Samplers or Sensors. This Ontology does not classify Systems as being either Samplers or Sensors, and this would be a useful enhancement for future versions. The Event is also characterized by some additional metadata about the Latitude, Longitude, Datetime, etc. describing where and when the data were collected.
Type	http://www.w3.org/2002/07/owl#Class

definition	"Event" is ambiguous in the context of the MOSAiC Expedition, potentially indicating many different types of activities, places, or products, as described in the extract above taken verbatim from the Pangaea website. In this Ontology, "Event" is being presented in the way it was most typically used on the MOSAiC data archive accessed through the Pangaea website-- as a "label" for a Sampling Event, involving the collection of one type of data collected by a specific type of "Method/Device", that is described by the "Device Long Name" and an associated "Device Short Name". In the PROVO ontology, a Method/Device is characterized as a System, that includes either Samplers or Sensors. This Ontology does not classify Systems as being either Samplers or Sensors, and this would be a useful enhancement for future versions. The Event is also characterized by some additional metadata about the Latitude, Longitude, Datetime, etc. describing where and when the data were collected.
comment	"Event" is ambiguous in the context of the MOSAiC Expedition, potentially indicating many different types of activities, places, or products, as described in the extract above taken verbatim from the Pangaea website. In this Ontology, "Event" is being presented in the way it was most typically used on the MOSAiC data archive accessed through the Pangaea website-- as a "label" for a Sampling Event, involving the collection of one type of data collected by a specific type of "Method/Device", that is described by the "Device Long Name" and an associated "Device Short Name". In the PROVO ontology, a Method/Device is characterized as a System, that includes either Samplers or Sensors. This Ontology does not classify Systems as being either Samplers or Sensors, and this would be a useful enhancement for future versions. The Event is also characterized by some additional metadata about the Latitude, Longitude, Datetime, etc. describing where and when the data were collected.
prefLabel	Event
description	Data sets published in PANGAEA are usually associated with an EVENT (synonyms site, station). An EVENT typically refers to the sampling event at which the data was obtained. Data submitters must provide sufficient information about these events, the EVENT label and latitude/longitude being mandatory information. EVENT is a rather generic term, depending on the type of data it can refer to (for example): Stations (during a cruise, expedition, field campaign) Deployments of sampling devices / sensors (device operation ID) Sampling events/ measurements along a transect / profile Sampling / observation time series Geographical origin of organisms (also of culture organisms) Time and space limited surveys Mappings Moorings Multiple investigations at a single site Field experiments Sample labels
prefixIRI	schema:Event
subClassOf	https://purl.dataone.org/odo/MOSAIC_00012000
type	http://www.w3.org/2002/07/owl#Class

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Widget type	Widget demonstration
Jump To Type a class name from MOSAIC and jump to it in BioPortal Get code	Step 2: Follow the Instructions Download the quick_jump.js file and put it on your server Copy the code below and paste it to your HTML page Note: If you would like to use Quick Jump across multiple ontologies: You can enter a comma-separated list of ontology ids: var BP_ontology_id = "NCIt,SNOMEDCT"; You can set the variable to 'all' to search all ontologies in BioPortal: var BP_ontology_id = "all"; To include definitions in the Jump To drop-down, add the following variable in Javascript: var BP_include_definitions = true; In the code that you just pasted, make sure to change the path to the quick_jump.js file to point to the location where you put the file (relative to your HTML file) For example, if you put the quick_jump.js file in the same directory as your HTML file, this is the code you would use: <div id="bp_quick_jump"></div> <script type="text/javascript"> var BP_ontology_id = "MOSAIC";</script> <script src="quick_jump.js" type="text/javascript" charset="utf-8"></script> For more help visit NCBO Widget Wiki
Form Autocomplete Fill your form fields with classes from MOSAIC Get code	Example 1 (start typing the class name to get its full URI) Example 2 (get the ID for a class) Example 3 (get the preferred name for a class) Step 2: Follow the Instructions Download the form_complete.js file and put it on your server. In the header for the page where you want the form field, include the form_complete.js file. On your form, for the fields where you want to use the class-selection widget, specify the field's class in the following format: `bp_form_complete-{ontology_id_list}-{value}` For example, `bp_form_complete-NCIT-uri` will use NCI Thesaurus (ontology id is NCIT) and will put the class URI in the field after the user selects the class from the pull-down list. Note: In addition to single ontology ids, you can use a list: `bp_form_complete-NCIT,NCBITAXON-uri` OR use 'all' to search across all BioPortal ontologies: `bp_form_complete-all-uri` The autocomplete widget accesses ontology content from the latest version of the ontology. You can use the following parameters to select which value will be placed into the user-visible input field: `uri` put the complete URI of the class (e.g., https://purl.dataone.org/odo/MOSAIC_00000832 ) `shortid` put the short id of the class, as used in BioPortal (e.g., "Common_Neoplasm"); `name` put the preferred name of the class (e.g., "Common Neoplasm"); In addition to the input element you defined, there are four hidden form elements that are created and then set when a user selects a class from the list. For example, if you create a field with this code: <input type="text" name="a" class="bp_form_complete-all-uri" size="100"/> The 'name' attribute is used to create the four following fields (note how the 'a' from the name attribute is appended to the id attribute): <input type="hidden" id="a_bioportal_preferred_name"> <input type="hidden" id="a_bioportal_concept_id"> <input type="hidden" id="a_bioportal_ontology_id"> <input type="hidden" id="a_bioportal_full_id"> Additional parameters are documented on the NCBO Widget Wiki For more help visit NCBO Widget Wiki
Visualization Display a visualization for a given class in MOSAIC Get code	Step 2: Follow the Instructions Copy the code below and paste it to your HTML page <iframe frameborder="0" src="/widgets/visualization?ontology=MOSAIC&class=https%3A%2F%2Fpurl.dataone.org%2Fodo%2FMOSAIC_00000832&apikey=YOUR_API_KEY"></iframe> For more help visit NCBO Widget Wiki
Tree Widget Display a class tree with a search field for MOSAIC Get code	Step 2: Follow the Instructions Copy the code below and paste it to your HTML page <link rel="stylesheet" type="text/css" href="/widgets/jquery.ncbo.tree.css"> <script src="/widgets/jquery.ncbo.tree-2.0.2.js"></script> <div id="widget_tree"></div> var widget_tree = $("#widget_tree").NCBOTree({ apikey: "YOUR_API_KEY", ontology: "MOSAIC" }); You can also view a detailed demonstration For more help visit NCBO Widget Wiki