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Molecular Interaction Map
Last uploaded:
October 30, 2014
| Acronym | MIM |
| Visibility | Public |
| Description | The Molecular Interaction Map (MIM) notation seeks to provide a standardized method to draw diagrams for bioregulatory networks with features similar to technical diagrams in other fields. This vocabulary uses the term hierarchy from the Formal MIM Notation Specification. Where possible, Systems Biology Ontology (SBO) and Biological Pathway Exchange (BioPAX) terms and IRIs are used. If no SBO or BioPAX term is available, a new term and IRI are created. This is currently only a partial implementation. Many elements still need to be added to cover the full the specification. |
| Status | Alpha |
| Format | OWL |
| Contact | Anders Riutta, anders.riutta@gladstone.ucsf.edu |
| Categories | Biological Process, Vocabularies |
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| Id | http://www.biopax.org/release/biopax-level3.owl#SmallMoleculeReference
http://www.biopax.org/release/biopax-level3.owl#SmallMoleculeReference
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|---|---|
| Preferred Name | SmallMoleculeReference |
| Definitions |
A small molecule reference is a grouping of several small molecule entities that have the same chemical structure. Members can differ in celular location and bound partners. Covalent modifications of small molecules are not considered as state changes but treated as different molecules.
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| Type | http://www.w3.org/2002/07/owl#Class |
All Properties
| definition | A small molecule reference is a grouping of several small molecule entities that have the same chemical structure. Members can differ in celular location and bound partners. Covalent modifications of small molecules are not considered as state changes but treated as different molecules. |
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| prefLabel | SmallMoleculeReference
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| comment | A small molecule reference is a grouping of several small molecule entities that have the same chemical structure. Members can differ in celular location and bound partners. Covalent modifications of small molecules are not considered as state changes but treated as different molecules.
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| prefixIRI | SmallMoleculeReference
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| subClassOf | |
| type |
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