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Molecular Interaction Map
| Preferred Name | ControlledVocabulary | |
| Synonyms |
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| Definitions |
Definition: This class represents a term from an external controlled vocabulary (CV). Rationale: Controlled Vocabularies mark cases where BioPAX delegates the representation of a complex biological phenomena to an external controlled vocabulary development effort such as Gene Ontology. Each subclass of this class represents one such case and often has an associated "Best-Practice" external resource to use. See the documentation of each subclass for more specific information. Correct usage of controlled vocabularies are critical to data exchange and integration. Usage: The individuals belonging to this class must unambiguously refer to the source controlled vocabulary. This can be achieved in two manners: The xref property of this class is restricted to the unification xref class. It must point to the source controlled vocabulary. Alternatively the rdf-id of the member individuals can be set to the designated MIRIAM URN. It is a best practice to do both whenever possible. Although it is possible to use multiple unification xrefs to identify semantically identical terms across alternative controlled vocabularies, this is not a recommended practice as it might lead to maintenance issues as the controlled vocabularies change. There is no recommended use-case for directly instantiating this class. Please use its subclasses instead. |
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| ID |
http://www.biopax.org/release/biopax-level3.owl#ControlledVocabulary |
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| comment |
Definition: This class represents a term from an external controlled vocabulary (CV).
Rationale: Controlled Vocabularies mark cases where BioPAX delegates the representation of a complex biological phenomena to an external controlled vocabulary development effort such as Gene Ontology. Each subclass of this class represents one such case and often has an associated "Best-Practice" external resource to use. See the documentation of each subclass for more specific information. Correct usage of controlled vocabularies are critical to data exchange and integration.
Usage: The individuals belonging to this class must unambiguously refer to the source controlled vocabulary. This can be achieved in two manners:
The xref property of this class is restricted to the unification xref class. It must point to the source controlled vocabulary.
Alternatively the rdf-id of the member individuals can be set to the designated MIRIAM URN.
It is a best practice to do both whenever possible.
Although it is possible to use multiple unification xrefs to identify semantically identical terms across alternative controlled vocabularies, this is not a recommended practice as it might lead to maintenance issues as the controlled vocabularies change.
There is no recommended use-case for directly instantiating this class. Please use its subclasses instead.
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|
| definition |
Definition: This class represents a term from an external controlled vocabulary (CV).
Rationale: Controlled Vocabularies mark cases where BioPAX delegates the representation of a complex biological phenomena to an external controlled vocabulary development effort such as Gene Ontology. Each subclass of this class represents one such case and often has an associated "Best-Practice" external resource to use. See the documentation of each subclass for more specific information. Correct usage of controlled vocabularies are critical to data exchange and integration.
Usage: The individuals belonging to this class must unambiguously refer to the source controlled vocabulary. This can be achieved in two manners:
The xref property of this class is restricted to the unification xref class. It must point to the source controlled vocabulary.
Alternatively the rdf-id of the member individuals can be set to the designated MIRIAM URN.
It is a best practice to do both whenever possible.
Although it is possible to use multiple unification xrefs to identify semantically identical terms across alternative controlled vocabularies, this is not a recommended practice as it might lead to maintenance issues as the controlled vocabularies change.
There is no recommended use-case for directly instantiating this class. Please use its subclasses instead.
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| prefixIRI |
ControlledVocabulary
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| prefLabel |
ControlledVocabulary
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| disjointWith |
http://www.biopax.org/release/biopax-level3.owl#EntityReference http://www.biopax.org/release/biopax-level3.owl#PathwayStep http://www.biopax.org/release/biopax-level3.owl#Xref http://www.biopax.org/release/biopax-level3.owl#Score http://www.biopax.org/release/biopax-level3.owl#DeltaG http://www.biopax.org/release/biopax-level3.owl#Evidence http://www.biopax.org/release/biopax-level3.owl#Stoichiometry http://www.biopax.org/release/biopax-level3.owl#SequenceLocation http://www.biopax.org/release/biopax-level3.owl#EntityFeature http://www.biopax.org/release/biopax-level3.owl#Provenance http://www.biopax.org/release/biopax-level3.owl#KPrime http://www.biopax.org/release/biopax-level3.owl#ExperimentalForm |
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| subClassOf |
http://www.biopax.org/release/biopax-level3.owl#UtilityClass |
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