Intelligence Task Ontology

Last uploaded: September 9, 2022
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Preferred Name

Mapping
Synonyms

Linkage mapping

Linkage

Genetic linkage

Synteny
Definitions

This includes resources that aim to identify, map or analyse genetic markers in DNA sequences, for example to produce a genetic (linkage) map of a chromosome or genome or to analyse genetic linkage and synteny. It also includes resources for physical (sequence) maps of a DNA sequence showing the physical distance (base pairs) between features or landmarks such as restriction sites, cloned DNA fragments, genes and other genetic markers. It also covers for example the alignment of sequences of (typically millions) of short reads to a reference genome.
ID

http://edamontology.org/topic_0102
comment

This includes resources that aim to identify, map or analyse genetic markers in DNA sequences, for example to produce a genetic (linkage) map of a chromosome or genome or to analyse genetic linkage and synteny. It also includes resources for physical (sequence) maps of a DNA sequence showing the physical distance (base pairs) between features or landmarks such as restriction sites, cloned DNA fragments, genes and other genetic markers. It also covers for example the alignment of sequences of (typically millions) of short reads to a reference genome.
altLabel

Linkage mapping

Linkage

Genetic linkage

Synteny
hasDefinition

The mapping of complete (typically nucleotide) sequences. Mapping (in the sense of short read alignment, or more generally, just alignment) has application in RNA-Seq analysis (mapping of transcriptomics reads), variant discovery (e.g. mapping of exome capture), and re-sequencing (mapping of WGS reads).
hasNarrowSynonym

Linkage mapping

Linkage

Genetic linkage

Synteny
label

Mapping
prefixIRI

topic_0102
prefLabel

Mapping
seeAlso

https://en.wikipedia.org/wiki/Gene_mapping
subClassOf

http://edamontology.org/topic_0080
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