Human Interaction Network Ontology

Last uploaded: June 27, 2014
Preferred Name

Target DNA binding
Synonyms
Definitions

Reviewed: Bushman, FD, 2006-10-30 22:19:13 How the PIC finds favored sites on target DNA has not been fully clarified. Active genes are favored for integration, and favored sequences at the site of integration also influence the reaction. Studies of cells depeleted in PSIP1/LEDGF/p75 suggest that this protein acts as a tethering factor binding HIV PICs near integration target DNA. Access of PICs to sites on chromosomes may be significant, since centromeric alphoid repeats are disfavored for integration, perhaps due to wrapping in compact centromeric heterochromatin. Nucleosomes bound to the integration template also affect target site selection and integration complex binding. Edited: Gopinathrao, G, D'Eustachio, P, 2006-05-18 20:10:22 Authored: Gopinathrao, G, D'Eustachio, P, 2006-05-18 20:10:22

ID

http://purl.obolibrary.org/obo/HINO_0024843

comment

Reviewed: Bushman, FD, 2006-10-30 22:19:13

How the PIC finds favored sites on target DNA has not been fully clarified. Active genes are favored for integration, and favored sequences at the site of integration also influence the reaction. Studies of cells depeleted in PSIP1/LEDGF/p75 suggest that this protein acts as a tethering factor binding HIV PICs near integration target DNA. Access of PICs to sites on chromosomes may be significant, since centromeric alphoid repeats are disfavored for integration, perhaps due to wrapping in compact centromeric heterochromatin. Nucleosomes bound to the integration template also affect target site selection and integration complex binding.

Edited: Gopinathrao, G, D'Eustachio, P, 2006-05-18 20:10:22

Authored: Gopinathrao, G, D'Eustachio, P, 2006-05-18 20:10:22

definition source

Pubmed16311605

Pubmed16175173

Pubmed15802467

Pubmed16291214

Reactome, http://www.reactome.org

Pubmed15314653

Pubmed1760846

Pubmed12202041

Pubmed9557688

Pubmed15677323

Pubmed16260736

has input

http://purl.obolibrary.org/obo/HINO_0027182

http://purl.obolibrary.org/obo/HINO_0009473

has output

http://purl.obolibrary.org/obo/HINO_0013813

http://purl.obolibrary.org/obo/HINO_0013866

label

Target DNA binding

prefixIRI

HINO:0024843

prefLabel

Target DNA binding

seeAlso

Reactome Database ID Release 43175108

ReactomeREACT_9054

subClassOf

http://purl.obolibrary.org/obo/INO_0000040

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