Preferred Name | Locus | |
Synonyms |
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Definitions |
A locus refers to a position within a designated genomic landmark. Actual locus coordinates should be provided using classes of the Feature Annotation Location Description Ontology. The class encodes for the "start", "end" and "strand" columns in GFF3, GTF, and GVF and for the "POS" column in VCF. It also encodes the "Start_range" and "End_range" attributes in GVF. |
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ID |
https://www.codamono.com/biointerchange/gfvo#Locus |
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comment |
A locus refers to a position within a designated genomic landmark. Actual locus coordinates should be provided using classes of the Feature Annotation Location Description Ontology. The class encodes for the "start", "end" and "strand" columns in GFF3, GTF, and GVF and for the "POS" column in VCF. It also encodes the "Start_range" and "End_range" attributes in GVF. |
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isDefinedBy |
http://www.1000genomes.org/wiki/Analysis/Variant%20Call%20Format/vcf-variant-call-format-version-41 http://www.ensembl.org/info/website/upload/gff.html http://samtools.github.io/hts-specs/VCFv4.2.pdf http://sequenceontology.org/resources/gvf.html |
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label |
Locus |
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prefixIRI |
Locus |
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prefLabel |
Locus |
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seeAlso | ||
subClassOf |
https://www.codamono.com/biointerchange/gfvo#InformationContentEntity |