Genomic Feature and Variation Ontology

Last uploaded: October 14, 2016
Preferred Name

Locus
Synonyms
Definitions

A locus refers to a position within a designated genomic landmark. Actual locus coordinates should be provided using classes of the Feature Annotation Location Description Ontology. The class encodes for the "start", "end" and "strand" columns in GFF3, GTF, and GVF and for the "POS" column in VCF. It also encodes the "Start_range" and "End_range" attributes in GVF.

ID

https://www.codamono.com/biointerchange/gfvo#Locus

comment

A locus refers to a position within a designated genomic landmark. Actual locus coordinates should be provided using classes of the Feature Annotation Location Description Ontology. The class encodes for the "start", "end" and "strand" columns in GFF3, GTF, and GVF and for the "POS" column in VCF. It also encodes the "Start_range" and "End_range" attributes in GVF.

isDefinedBy

http://www.1000genomes.org/wiki/Analysis/Variant%20Call%20Format/vcf-variant-call-format-version-41

http://www.ensembl.org/info/website/upload/gff.html

http://samtools.github.io/hts-specs/VCFv4.2.pdf

http://sequenceontology.org/resources/gvf.html

http://samtools.github.io/hts-specs/VCFv4.1.pdf

http://sequenceontology.org/resources/gff3.html

label

Locus

prefixIRI

Locus

prefLabel

Locus

seeAlso

http://en.wikipedia.org/wiki/Locus_(genetics)

subClassOf

https://www.codamono.com/biointerchange/gfvo#InformationContentEntity

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