Genotype Ontology

Last uploaded: October 8, 2023
Preferred Name

karyotype

Synonyms
Definitions

Karyotypes describe structural variation across a genome at the level of chromosomal morphology and banding patterns detectable in stained chromosomal spreads. This coarser level does not capture more granular levels of variation commonly represented in other forms of genotypes (e.g. specific alleles and sequence alterations). A base karyotype representing a genome with no known structural variation can be as simple as '46XY', but karyotypes typically contains some gross variant component (such as a chromosome duplication or translocation). A genotype that describes what is known about variation in a genome at a gross structural level, in terms of the number and appearance of chromosomes in the nucleus of a eukaryotic cell.

ID

http://purl.obolibrary.org/obo/GENO_0000644

comment

Karyotypes describe structural variation across a genome at the level of chromosomal morphology and banding patterns detectable in stained chromosomal spreads. This coarser level does not capture more granular levels of variation commonly represented in other forms of genotypes (e.g. specific alleles and sequence alterations). A base karyotype representing a genome with no known structural variation can be as simple as '46XY', but karyotypes typically contains some gross variant component (such as a chromosome duplication or translocation).

definition

A genotype that describes what is known about variation in a genome at a gross structural level, in terms of the number and appearance of chromosomes in the nucleus of a eukaryotic cell.

definition source

Derived from http://en.wikipedia.org/wiki/Karyotype (accessed 2017-03-28)

label

karyotype

prefixIRI

GENO:0000644

prefLabel

karyotype

subClassOf

http://purl.obolibrary.org/obo/GENO_0000899

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http://www.ebi.ac.uk/efo/EFO_0004426 EFO LOOM
http://www.owl-ontologies.com/Ontology1358660052.owl#Karyotype PEDTERM LOOM
http://purl.bioontology.org/ontology/SNOMEDCT/734840008 SNOMEDCT LOOM
http://purl.bioontology.org/ontology/LNC/MTHU014085 LOINC LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#G05.360.162.679 RH-MESH LOOM
http://purl.obolibrary.org/obo/EFO_0004426 MIRO LOOM
http://purl.obolibrary.org/obo/EFO_0004426 IDOMAL LOOM
http://id.nlm.nih.gov/mesh/D059785 MDM LOOM
http://sbmi.uth.tmc.edu/ontology/ochv#18357 OCHV LOOM
http://purl.bioontology.org/ontology/MESH/D059785 MESH LOOM
http://purl.bioontology.org/ontology/MESH/D059785 GSSO LOOM
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C25215 NCIT LOOM
http://www.projecthalo.com/aura#Karyotype AURA LOOM
http://sbmi.uth.tmc.edu/ontology/ochv#C0178725 OCHV LOOM
http://purl.bioontology.org/ontology/LNC/LP28493-2 LOINC LOOM
http://purl.obolibrary.org/obo/MESH_D059785 BERO LOOM
http://purl.bioontology.org/ontology/RCD/XaE6J RCD LOOM
http://purl.bioontology.org/ontology/CSP/1258-8307 CRISP LOOM
http://phenomebrowser.net/ontologies/mesh/mesh.owl#D059785 RH-MESH LOOM
http://purl.obolibrary.org/obo/OMIT_0027661 OMIT LOOM
http://sbmi.uth.tmc.edu/ontology/ochv#56426 OCHV LOOM
http://www.co-ode.org/ontologies/galen#Karyotype GALEN LOOM
http://purl.jp/bio/4/id/200906030861503162 IOBC LOOM
http://purl.bioontology.org/ontology/RCTV2/4L2..00 RCTV2 LOOM
http://sbmi.uth.tmc.edu/ontology/ochv#C1261273 OCHV LOOM