EDAM - The data analysis and management ontology

Last uploaded: February 26, 2021
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Preferred Name

Scaffolding
Synonyms

Scaffold generation

Scaffold construction
Definitions

Scaffold may be positioned along a chromosome physical map to create a "golden path". Link together a non-contiguous series of genomic sequences into a scaffold, consisting of sequences separated by gaps of known length. The sequences that are linked are typically typically contigs; contiguous sequences corresponding to read overlaps.
ID

http://edamontology.org/operation_3216
comment

Scaffold may be positioned along a chromosome physical map to create a "golden path".
Created in

1.1
hasDefinition

Link together a non-contiguous series of genomic sequences into a scaffold, consisting of sequences separated by gaps of known length. The sequences that are linked are typically typically contigs; contiguous sequences corresponding to read overlaps.
hasExactSynonym

Scaffold generation

Scaffold construction
inSubset

http://edamontology.org/bio

http://edamontology.org/operations
label

Scaffolding
prefixIRI

operation_3216
prefLabel

Scaffolding
subClassOf

http://edamontology.org/operation_3429

http://edamontology.org/operation_0310
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