EDAM - The data analysis and management ontology

Last uploaded: February 26, 2021
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Preferred Name

mirGFF3
Synonyms

miRTop format
Definitions

mirGFF3 is a specialisation of GFF3; produced by small-RNA-Seq analysis workflows, usable and convertible with the miRTop API (https://mirtop.readthedocs.io/en/latest/), and consumable by tools for downstream analysis. mirGFF3 is a common format for microRNA data resulting from small-RNA RNA-Seq workflows.
ID

http://edamontology.org/format_3864
comment

mirGFF3 is a specialisation of GFF3; produced by small-RNA-Seq analysis workflows, usable and convertible with the miRTop API (https://mirtop.readthedocs.io/en/latest/), and consumable by tools for downstream analysis.
Citation

https://doi.org/10.7490/f1000research.1115724.1
Created in

1.21
Documentation

https://github.com/miRTop/mirGFF3/blob/master/definition.md
Example

https://github.com/miRTop/mirGFF3/blob/master/example.gff
hasDefinition

mirGFF3 is a common format for microRNA data resulting from small-RNA RNA-Seq workflows.
hasExactSynonym

miRTop format
inSubset

http://edamontology.org/bio

http://edamontology.org/formats
label

mirGFF3
prefixIRI

format_3864
prefLabel

mirGFF3
Repository

https://github.com/miRTop/mirGFF3
subClassOf

http://edamontology.org/format_3865

http://edamontology.org/format_1975
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