Preferred Name

Interaction

Synonyms
Definitions

Definition: A biological relationship between two or more entities. Rationale: BioPAX interactions are atomic from modeling perspective, i.e. it is not possible to define sub-interactions. For representing non-atomic continuants with explicit subevents, pathway class should be used. Interactions does not have to be temporally atomic though, for example genetic interactions cover a large span of time. Usage: Interaction is a highly abstract class and in almost all cases it is more appropriate to use subclasses of interaction. It is partially possible to define generic reactions by using generic participants. A more comprehensive method is planned for BioPAX L4 for covering all generic cases like oxidization of a generic alcohol. Synonyms: Process, relationship, event. Examples: protein-protein interaction, biochemical reaction, enzyme catalysis Definition: A biological relationship between two or more entities. Rationale: In BioPAX, interactions are atomic from a database modeling perspective, i.e. interactions can not be decomposed into sub-interactions. When representing non-atomic continuants with explicit subevents the pathway class should be used instead. Interactions are not necessarily temporally atomic, for example genetic interactions cover a large span of time. Interactions as a formal concept is a continuant, it retains its identitiy regardless of time, or any differences in specific states or properties. Usage: Interaction is a highly abstract class and in almost all cases it is more appropriate to use one of the subclasses of interaction. It is partially possible to define generic reactions by using generic participants. A more comprehensive method is planned for BioPAX L4 for covering all generic cases like oxidization of a generic alcohol. Synonyms: Process, relationship, event. Examples: protein-protein interaction, biochemical reaction, enzyme catalysis

ID

http://www.biopax.org/release/biopax-level3.owl#Interaction

comment

Definition: A biological relationship between two or more entities. Rationale: BioPAX interactions are atomic from modeling perspective, i.e. it is not possible to define sub-interactions. For representing non-atomic continuants with explicit subevents, pathway class should be used. Interactions does not have to be temporally atomic though, for example genetic interactions cover a large span of time. Usage: Interaction is a highly abstract class and in almost all cases it is more appropriate to use subclasses of interaction. It is partially possible to define generic reactions by using generic participants. A more comprehensive method is planned for BioPAX L4 for covering all generic cases like oxidization of a generic alcohol. Synonyms: Process, relationship, event. Examples: protein-protein interaction, biochemical reaction, enzyme catalysis

Definition: A biological relationship between two or more entities. Rationale: In BioPAX, interactions are atomic from a database modeling perspective, i.e. interactions can not be decomposed into sub-interactions. When representing non-atomic continuants with explicit subevents the pathway class should be used instead. Interactions are not necessarily temporally atomic, for example genetic interactions cover a large span of time. Interactions as a formal concept is a continuant, it retains its identitiy regardless of time, or any differences in specific states or properties. Usage: Interaction is a highly abstract class and in almost all cases it is more appropriate to use one of the subclasses of interaction. It is partially possible to define generic reactions by using generic participants. A more comprehensive method is planned for BioPAX L4 for covering all generic cases like oxidization of a generic alcohol. Synonyms: Process, relationship, event. Examples: protein-protein interaction, biochemical reaction, enzyme catalysis

prefixIRI

bp:Interaction

Interaction

prefLabel

Interaction

disjointWith

http://www.biopax.org/release/biopax-level3.owl#PhysicalEntity

http://www.biopax.org/release/biopax-level3.owl#Pathway

subClassOf

http://www.biopax.org/release/biopax-level3.owl#Entity

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Delete Mapping To Ontology Source
http://www.biopax.org/release/biopax-level3.owl#Interaction MIM SAME_URI
http://www.biopax.org/release/biopax-level3.owl#Interaction BP SAME_URI
http://purl.obolibrary.org/obo/NCIT_C54216 PREMEDONTO LOOM
http://purl.obolibrary.org/obo/NCIT_C54216 GSSO LOOM
http://sweetontology.net/proc/Interaction SWEET LOOM
http://www.biopax.org/release/biopax-level3.owl#Interaction MIM LOOM
http://www.biopax.org/release/biopax-level3.owl#Interaction BP LOOM
http://vocabularies.wikipathways.org/wp#Interaction WIKIPATHWAYS LOOM
http://www.dispedia.de/o/DrugInteraction DCO LOOM
http://purl.obolibrary.org/obo/INO_0000002 OHPI LOOM
http://purl.obolibrary.org/obo/INO_0000002 LIFO LOOM
http://purl.obolibrary.org/obo/INO_0000002 INO LOOM
http://purl.obolibrary.org/obo/INO_0000002 OHMI LOOM
http://purl.obolibrary.org/obo/INO_0000002 HINO LOOM
http://www.semanticweb.org/dimitrios/ontologies/2013/2/untitled-ontology-2#Interaction CABRO LOOM
http://purl.bioontology.org/ontology//17070 METABUS LOOM
http://purl.obolibrary.org/obo/VariO_0236 VARIO LOOM
http://vocabularies.wikipathways.org/gpml#Interaction GPML LOOM
http://doe-generated-ontology.com/OntoAD#C1704675 ONTOAD LOOM
http://purl.org/metabus/17070 TESTING_BOSCO LOOM
http://purl.org/metabus/17070 METABUS LOOM
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C54216 NCIT LOOM
http://www.semanticweb.org/ontologies/2010/3/Ontology1271664172453.owl#Interaction PLIO LOOM
http://www.semanticweb.org/Thibaut/ontologies/2021/3/OntoBioStat#Interaction OBS LOOM
http://purl.obolibrary.org/obo/MI_0317 MI LOOM
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#Interaction SYN LOOM
http://sweetontology.net/phenSystem/Interaction SWEET LOOM
http://www.stanford.edu/~coulet/phare.owl#DrugInteraction PHARE LOOM
http://purl.obolibrary.org/obo/ODGI.owl#Interaction OGDI LOOM
http://www.stanford.edu/~coulet/phare.owl#GeneProductInteraction PHARE LOOM