Cigarette Smoke Exposure Ontology - Anthrax - Classes | NCBO BioPortal

Cigarette Smoke Exposure Ontology

Last uploaded: July 10, 2014

Details

Acronym	CSEO
Visibility	Public
Description	The CSEO has potential to become a widely used standard within the academic and industrial community. Mainly because of the emerging need of systems toxicology to controlled vocabularies and also the lack of suitable ontologies for this domain, the CSEO prepares the ground for integrative systems-based research in the exposure science.
Status	Beta
Format	OWL
Contact	Dr. Sam Ansari , sam.ansari@pmi.com
Categories	Health

Version	Released	Uploaded	Downloads
1.0 (Parsed, Indexed, Metrics, Annotator)	07/10/2014	07/10/2014	OWL \| CSV \| RDF/XML \| Diff
0.9 (Archived)	07/10/2014	07/10/2014	OWL

No views of CSEO available

Classes	20,085
Individuals	0
Properties	91
Maximum depth	21
Maximum number of children	413
Average number of children	4
Classes with a single child	1,574
Classes with more than 25 children	97
Classes with no definition	20,085

No projects using CSEO

Id	http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#Anthrax http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#Anthrax
Preferred Name	Anthrax
Type	http://www.w3.org/2002/07/owl#Class

label	Anthrax
prefLabel	Anthrax
DEFINITION	An infection caused by Bacillus anthracis bacteria. It may affect the lungs, gastrointestinal tract, or skin. Patients with lung infection present with fever, headaches, cough, chest pain and shortness of breath. Patients with gastrointestinal infection present with nausea, vomiting and bloody diarrhea. Patients with skin infection develop blisters and ulcers.
isDefinedBy	An infection caused by Bacillus anthracis bacteria. It may affect the lungs, gastrointestinal tract, or skin. Patients with lung infection present with fever, headaches, cough, chest pain and shortness of breath. Patients with gastrointestinal infection present with nausea, vomiting and bloody diarrhea. Patients with skin infection develop blisters and ulcers.
prefixIRI	Thesaurus:Anthrax
subClassOf	http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#Bacterial_Infection
type	http://www.w3.org/2002/07/owl#Class

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Add NCBO Web Widgets to your site for CSEO

Widget type	Widget demonstration
Jump To Type a class name from CSEO and jump to it in BioPortal Get code	Step 2: Follow the Instructions Download the quick_jump.js file and put it on your server Copy the code below and paste it to your HTML page Note: If you would like to use Quick Jump across multiple ontologies: You can enter a comma-separated list of ontology ids: var BP_ontology_id = "NCIt,SNOMEDCT"; You can set the variable to 'all' to search all ontologies in BioPortal: var BP_ontology_id = "all"; To include definitions in the Jump To drop-down, add the following variable in Javascript: var BP_include_definitions = true; In the code that you just pasted, make sure to change the path to the quick_jump.js file to point to the location where you put the file (relative to your HTML file) For example, if you put the quick_jump.js file in the same directory as your HTML file, this is the code you would use: <div id="bp_quick_jump"></div> <script type="text/javascript"> var BP_ontology_id = "CSEO";</script> <script src="quick_jump.js" type="text/javascript" charset="utf-8"></script> For more help visit NCBO Widget Wiki
Form Autocomplete Fill your form fields with classes from CSEO Get code	Example 1 (start typing the class name to get its full URI) Example 2 (get the ID for a class) Example 3 (get the preferred name for a class) Step 2: Follow the Instructions Download the form_complete.js file and put it on your server. In the header for the page where you want the form field, include the form_complete.js file. On your form, for the fields where you want to use the class-selection widget, specify the field's class in the following format: `bp_form_complete-{ontology_id_list}-{value}` For example, `bp_form_complete-NCIT-uri` will use NCI Thesaurus (ontology id is NCIT) and will put the class URI in the field after the user selects the class from the pull-down list. Note: In addition to single ontology ids, you can use a list: `bp_form_complete-NCIT,NCBITAXON-uri` OR use 'all' to search across all BioPortal ontologies: `bp_form_complete-all-uri` The autocomplete widget accesses ontology content from the latest version of the ontology. You can use the following parameters to select which value will be placed into the user-visible input field: `uri` put the complete URI of the class (e.g., http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#Non-familiar_Idiopathic_Dystonia ) `shortid` put the short id of the class, as used in BioPortal (e.g., "Common_Neoplasm"); `name` put the preferred name of the class (e.g., "Common Neoplasm"); In addition to the input element you defined, there are four hidden form elements that are created and then set when a user selects a class from the list. For example, if you create a field with this code: <input type="text" name="a" class="bp_form_complete-all-uri" size="100"/> The 'name' attribute is used to create the four following fields (note how the 'a' from the name attribute is appended to the id attribute): <input type="hidden" id="a_bioportal_preferred_name"> <input type="hidden" id="a_bioportal_concept_id"> <input type="hidden" id="a_bioportal_ontology_id"> <input type="hidden" id="a_bioportal_full_id"> Additional parameters are documented on the NCBO Widget Wiki For more help visit NCBO Widget Wiki
Visualization Display a visualization for a given class in CSEO Get code	Step 2: Follow the Instructions Copy the code below and paste it to your HTML page <iframe frameborder="0" src="/widgets/visualization?ontology=CSEO&class=http%3A%2F%2Fncicb.nci.nih.gov%2Fxml%2Fowl%2FEVS%2FThesaurus.owl%23Non-familiar_Idiopathic_Dystonia&apikey=YOUR_API_KEY"></iframe> For more help visit NCBO Widget Wiki
Tree Widget Display a class tree with a search field for CSEO Get code	Step 2: Follow the Instructions Copy the code below and paste it to your HTML page <link rel="stylesheet" type="text/css" href="/widgets/jquery.ncbo.tree.css"> <script src="/widgets/jquery.ncbo.tree-2.0.2.js"></script> <div id="widget_tree"></div> var widget_tree = $("#widget_tree").NCBOTree({ apikey: "YOUR_API_KEY", ontology: "CSEO" }); You can also view a detailed demonstration For more help visit NCBO Widget Wiki