Biological Pathway Taxonomy

Last uploaded: March 30, 2022
Preferred Name

Hepatocellular Carcinoma
Synonyms

CellType: hepatocyte

PathwayType: signaling

Link: https://mammal-profservices.pathwaystudio.com/app/sd?urn=urn:agi-pathway:uuid-7bfe358f-42c1-477f-b4b7-f6ef12486abd

CellType: cancer cell

PMID: 22652888

PMID: 22212931

Tissue: epithelium

PMID: 20175032

NodeType: Pathway

Organ: liver

Organ_System: digestive system

Description: Hepatocellular carcinoma (HCC) is one of the most lethal cancers worldwide. Pathway is built manually using published studies.

PMID: 20953207

Pathway_Author: M. Zharkova  ORCID:0000-0001-8706-9411

PMID: 23426905

Source: Diseases

Notes: Headnote: Hepatocellular carcinoma (HCC) is one of the most lethal cancers worldwide, and is most prevalent in Asia and Africa. In Asia, HCC is commonly related to hepatitis B or C virus (HBV and HCV) infection, while in Africa it is linked to chronic hepatitis B. The incidence is on the rise in some developed countries including Japan, UK, France, and U.S. In more than 80% of cases, HCC is associated with cirrhosis or advanced fibrosis. Cirrhosis typically results from chronic infection with HBV or HCV, alcohol abuse, or metabolic disorders such as hemochromatosis. Less common causes of HCC are exposure to dietary hepatocarcinogen like aflatoxin, insulin resistance syndrome, several genetic disorders, and drug-induced (e.g. anabolic steroids). HCC has a poor prognosis since less than 30% of newly diagnosed patients will be eligible for potential curative treatment. Signaling description: Genetic changes and their biological consequences in human HCC can be divided into several groups including mutation in tumor suppressor genes (TP53, RB1, PTEN, and RUNX3), mutation in oncogenes (MYC, KRAS, HRAS, and BRAF), activation of developmental pathways (WNT/CTNNB1 and NOTCH), and growth factors and their receptors (EGFRs, VEGFRs, IGF1R, TGFBR1, and MET). Outcome effects: The genetic alterations associated with HCC cause block of apoptosis, disruption of cell cycle and differentiation, redundant proliferation and migration of hepatocytes, block of chromatin remodeling and DNA repair, and vascularization. Highlighted proteins: Proteins with increased expression or activity are highlighted in red, and proteins with decreased expression or activity are highlighted in blue. Mutated genes: Mutated gene is shown in white-out style.

ID

urn:agi-pathway:uuid-7bfe358f-42c1-477f-b4b7-f6ef12486abd

database_cross_reference

PS:PathwayType

PS:Description

PS:Tissue

PS:Pathway_Author

PS:Link

PS:CellType

PS:Organ_System

PS:PMID

PS:NodeType

PS:Notes

PS:Organ

PS:Source

has_exact_synonym

CellType: hepatocyte

PathwayType: signaling

Link: https://mammal-profservices.pathwaystudio.com/app/sd?urn=urn:agi-pathway:uuid-7bfe358f-42c1-477f-b4b7-f6ef12486abd

CellType: cancer cell

PMID: 22652888

PMID: 22212931

Tissue: epithelium

PMID: 20175032

NodeType: Pathway

Organ: liver

Organ_System: digestive system

Description: Hepatocellular carcinoma (HCC) is one of the most lethal cancers worldwide. Pathway is built manually using published studies.

PMID: 20953207

Pathway_Author: M. Zharkova  ORCID:0000-0001-8706-9411

PMID: 23426905

Source: Diseases

Notes: Headnote: Hepatocellular carcinoma (HCC) is one of the most lethal cancers worldwide, and is most prevalent in Asia and Africa. In Asia, HCC is commonly related to hepatitis B or C virus (HBV and HCV) infection, while in Africa it is linked to chronic hepatitis B. The incidence is on the rise in some developed countries including Japan, UK, France, and U.S. In more than 80% of cases, HCC is associated with cirrhosis or advanced fibrosis. Cirrhosis typically results from chronic infection with HBV or HCV, alcohol abuse, or metabolic disorders such as hemochromatosis. Less common causes of HCC are exposure to dietary hepatocarcinogen like aflatoxin, insulin resistance syndrome, several genetic disorders, and drug-induced (e.g. anabolic steroids). HCC has a poor prognosis since less than 30% of newly diagnosed patients will be eligible for potential curative treatment. Signaling description: Genetic changes and their biological consequences in human HCC can be divided into several groups including mutation in tumor suppressor genes (TP53, RB1, PTEN, and RUNX3), mutation in oncogenes (MYC, KRAS, HRAS, and BRAF), activation of developmental pathways (WNT/CTNNB1 and NOTCH), and growth factors and their receptors (EGFRs, VEGFRs, IGF1R, TGFBR1, and MET). Outcome effects: The genetic alterations associated with HCC cause block of apoptosis, disruption of cell cycle and differentiation, redundant proliferation and migration of hepatocytes, block of chromatin remodeling and DNA repair, and vascularization. Highlighted proteins: Proteins with increased expression or activity are highlighted in red, and proteins with decreased expression or activity are highlighted in blue. Mutated genes: Mutated gene is shown in white-out style.

id

urn:agi-pathway:uuid-7bfe358f-42c1-477f-b4b7-f6ef12486abd

label

Hepatocellular Carcinoma

notation

uuid-7bfe358f-42c1-477f-b4b7-f6ef12486abd

prefLabel

Hepatocellular Carcinoma

treeView

urn:agi-folder:digestive_system

urn:agi-folder:hepatocellular_carcinoma

urn:agi-folder:h

urn:agi-folder:epithelium

subClassOf

urn:agi-folder:digestive_system

urn:agi-folder:hepatocellular_carcinoma

urn:agi-folder:h

urn:agi-folder:epithelium

Delete Subject Author Type Created
No notes to display
Create mapping

Delete Mapping To Ontology Source
http://radlex.org/RID/RID4271 RADLEX LOOM
http://nanbyodata.jp/ontology/NANDO_2200047 NANDO LOOM
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#Hepatocellular_Carcinoma CSEO LOOM
http://purl.obolibrary.org/obo/MONDO_0007256 GCBO LOOM
http://purl.obolibrary.org/obo/MONDO_0007256 MONDO LOOM
http://purl.obolibrary.org/obo/MONDO_0007256 DOVES LOOM
http://purl.obolibrary.org/obo/MONDO_0007256 OBA LOOM
http://purl.obolibrary.org/obo/MPATH_357 MPATH LOOM
http://purl.obolibrary.org/obo/MPATH_357 UPHENO LOOM
http://purl.obolibrary.org/obo/MPATH_357 ZP LOOM
http://www.owl-ontologies.com/NPOntology.owl#DOID_684 NATPRO LOOM
https://github.com/sap218/coid/blob/master/coid.owl#COID_00986 COID LOOM
http://purl.bioontology.org/ontology/OMIM/114550 OMIM LOOM
http://www.semanticweb.org/david/ontologies/2013/0/pathLex.owl#1.3.6.1.4.1.19376.1.8.2.1.898 PATHLEX LOOM
http://scai.fraunhofer.de/CSEO#Hepatocellular_Carcinoma CSEO LOOM
http://www.limics.org/hrdo/rdfns#pat_id_11824 HRDO LOOM
http://purl.bioontology.org/ontology/RCD/B1503 RCD LOOM
http://purl.obolibrary.org/obo/NCIT_C3099 BERO LOOM
http://purl.obolibrary.org/obo/HP_0001402 HP LOOM
http://purl.obolibrary.org/obo/HP_0001402 UPHENO LOOM
http://www.phoc.org.cn/pmo/class/PMO_00005815 PMAPP-PMO LOOM
http://purl.obolibrary.org/obo/OMIM_114550 CCO LOOM
http://www.semanticweb.org/ontologies/2012/5/Ontology1338526551855.owl#Hepatocellular_carcinoma RPO LOOM
http://www.orpha.net/ORDO/Orphanet_88673 ORDO LOOM
http://identifiers.org/omim/114550 REXO LOOM
http://identifiers.org/omim/114550 GEXO LOOM
http://identifiers.org/omim/114550 RETO LOOM
http://purl.bioontology.org/ontology/SNOMEDCT/25370001 SNOMEDCT LOOM
http://purl.obolibrary.org/obo/DOID_684 CLO LOOM
http://purl.obolibrary.org/obo/DOID_684 DTO LOOM
http://purl.obolibrary.org/obo/DOID_684 BMONT LOOM
http://purl.obolibrary.org/obo/DOID_684 DOID LOOM
http://purl.obolibrary.org/obo/DOID_684 BAO LOOM
http://purl.obolibrary.org/obo/DOID_684 HHEAR LOOM
http://purl.obolibrary.org/obo/DOID_684 DDSS LOOM
http://purl.obolibrary.org/obo/DOID_684 ODAE LOOM
http://purl.obolibrary.org/obo/DOID_684 NIFSTD LOOM
http://purl.obolibrary.org/obo/DOID_684 MIDO LOOM
http://purl.obolibrary.org/obo/DOID_684 OHMI LOOM
http://purl.obolibrary.org/obo/DOID_684 VO LOOM
http://purl.obolibrary.org/obo/DOID_684 FNS-H LOOM
http://purl.bioontology.org/ontology/CSP/2003-4684 CRISP LOOM
http://www.ebi.ac.uk/efo/EFO_0000182 CCONT LOOM
http://www.ebi.ac.uk/efo/EFO_0000182 EFO LOOM
http://www.ebi.ac.uk/efo/EFO_0000182 EFO LOOM
http://www.radlex.org/RID/RID4271 RADLEX LOOM
rgo:02104 GAMUTS LOOM
http://localhost/plosthes.2017-1#742 PLOSTHES LOOM
http://purl.bioontology.org/ontology/MEDDRA/10073071 MEDDRA LOOM
http://purl.bioontology.org/ontology/RCTV2/B150300 RCTV2 LOOM
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C3099 NCIT LOOM
http://purl.bioontology.org/ontology/OMIM/MTHU008946 OMIM LOOM
http://purl.bioontology.org/ontology/MEDLINEPLUS/C2239176 MEDLINEPLUS LOOM