loading...| Preferred Name | anatomical space | |
| Synonyms |
common coordinate space atlas space anatomical coordinate space physical space parameterized coordinate space |
|
| Definitions |
An anatomical space is a combination of a mathematical space with an anatomical space such that there is a defined mapping between the anatomical axes and the mathematical axes. A mathematical coordinate space by itself is NOT an anatomical space because it admits all possible orientations and reflections of the anatomical space, so for example a brain can be rotated in all directions and still be in that mathematical coordinate space. Such spaces are called unoriented spaces and are a source of significant pain when dealing with anatomical datasets. |
|
| ID |
http://uri.interlex.org/tgbugs/uris/readable/atlas/Space |
|
| BFO_0000051 |
http://uri.interlex.org/tgbugs/uris/readable/atlas/AxisOrigin http://uri.interlex.org/tgbugs/uris/readable/atlas/AnatomicalAxisAlignmentVector http://uri.interlex.org/tgbugs/uris/readable/atlas/AxisDirectionMatrix |
|
| definition |
An anatomical space is a combination of a mathematical space with an anatomical space such that there is a defined mapping between the anatomical axes and the mathematical axes. A mathematical coordinate space by itself is NOT an anatomical space because it admits all possible orientations and reflections of the anatomical space, so for example a brain can be rotated in all directions and still be in that mathematical coordinate space. Such spaces are called unoriented spaces and are a source of significant pain when dealing with anatomical datasets. |
|
| hasIlxId | ||
| IAO_0000115 |
An anatomical space is a combination of a mathematical space with an anatomical space such that there is a defined mapping between the anatomical axes and the mathematical axes. A mathematical coordinate space by itself is NOT an anatomical space because it admits all possible orientations and reflections of the anatomical space, so for example a brain can be rotated in all directions and still be in that mathematical coordinate space. Such spaces are called unoriented spaces and are a source of significant pain when dealing with anatomical datasets. |
|
| IAO_0000116 |
To avoid problems like those encountered by nifti an anatomical reference space MUST define an anatomical axis alignment vector which states, for example, [X, Y, Z] -> [R, A, D] (left hand rule). This immediately indicates the three annotations required on any unoriented dataset as opposed to someone trying to apply the anatomical directions directly to the unoriented dataset |
|
| label |
anatomical space |
|
| localName |
space |
|
| prefixIRI |
atom:Space |
|
| prefLabel |
anatomical space |
|
| synonym |
common coordinate space atlas space anatomical coordinate space physical space parameterized coordinate space |
|
| subClassOf |
http://uri.interlex.org/tgbugs/uris/readable/atlas/Artifact http://uri.interlex.org/tgbugs/uris/readable/parcellationArtifact |