Annotator Plus | NCBO BioPortal

Annotator +

Get annotations for biomedical text with classes from the ontologies

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Select ontologies

Start typing to select ontologies or leave blank to use all

Select UMLS semantic types

Start typing to select UMLS semantic types or leave blank to use all

Select UMLS semantic groups

Start typing to select UMLS semantic groups or leave blank to use all

Include ancestors up to level:

Include score:

Score annotations following the previous 2009 NCBO measure (old) or the C-Value measure (cvalue). If hierarchy expansion is used, then prefer cvalueh.

Filter by score threshold:

Specify the minimum score value for annotations

Filter confidence threshold:

Specify the minimum position in the scoring distribution (between 1 and 100)

Detect negation

Detect if a concept has been negated (affirmed, negated, possible)

Detect experiencer

Detect who experienced the each identified concept (patient, other)

Detect temporality

Detect when the annotated concept occurred (recent, historical, hypothetical)

Annotations

Class filter	Ontology filter	Type filter	UMLS Sem Type	Context	Matched Class filter	Matched Ontology filter	Score	Negation	Experiencer	Temporality

Format results as:

Reproduce these results using the

Additional parameters explained at Annotator API documentation