OntoCAT
Description:
High level abstraction API (Java/REST/R) for interacting with ontology resources including local ontology files in standard OWL and OBO formats (via OWL API) and public ontology repositories: EBI Ontology Lookup Service (OLS) and NCBO BioPortal.
Institution:
EMBL-EBI, University of Groningen
People:
Tomasz Adamusiak, Helen Parkinson, Natalja Kurbatova, Misha Kapushesky, Morris Swertz
Home Page:
http://www.ontocat.org
Ontologies Used
| HOM-OSHPD_UseCase |
| Not Reviewed Yet
|
| Sleep Domain Ontology |
| Not Reviewed Yet
|
| Units Ontology |
| Not Reviewed Yet
|
| HOM-OSHPD |
| Not Reviewed Yet
|
| HOM-DATASOURCE_OSHPD |
| Not Reviewed Yet
|
| HOM-ICD9_DXandVCODES_OSHPD |
| Not Reviewed Yet
|
| HOM-ICD9_PROCS_OSHPD |
| Not Reviewed Yet
|
| HOM-DXPROCS_MDCDRG |
| Not Reviewed Yet
|
| HOM-ICD9CM-ECODES |
| Not Reviewed Yet
|
| Pediatric Terminology |
| Not Reviewed Yet
|
| Epilepsy |
| Not Reviewed Yet
|
| Ontology of Core Data Mining Entities |
| Not Reviewed Yet
|
| Cognitive Atlas |
| Not Reviewed Yet
|
| Web-Service Interaction Ontology |
| Not Reviewed Yet
|
| HOM-HARVARD |
| Not Reviewed Yet
|
| HOM-UCARE |
| Not Reviewed Yet
|
| HOMERUN Ontology |
| Not Reviewed Yet
|
| Enzyme Mechanism Ontology |
| Not Reviewed Yet
|
| HOM-ICD9PCS |
| Not Reviewed Yet
|
| Neuro Behavior Ontology |
| Not Reviewed Yet
|
| Phylogenetic Ontology |
| Not Reviewed Yet
|
| Systems Chemical Biology/Chemogenomics |
| Not Reviewed Yet
|
| Interaction Ontology |
| Not Reviewed Yet
|
| Bone Dysplasia Ontology |
| Not Reviewed Yet
|
| HOM_MDCs-DRGS |
| Not Reviewed Yet
|
| Ontology of General Purpose Datatypes |
| Not Reviewed Yet
|
| Plant Ontology |
| Not Reviewed Yet
|
| Orphanet Ontology of Rare Diseases |
| Not Reviewed Yet
|
| Experimental Conditions Ontology |
| Not Reviewed Yet
|
| Measurement Method Ontology |
| Not Reviewed Yet
|
| Clinical Measurement Ontology |
| Not Reviewed Yet
|
| COG Analysis Ontology |
| Not Reviewed Yet
|
| HEALTH_INDICATORS |
| Not Reviewed Yet
|
| Adverse Event Reporting ontology |
| Not Reviewed Yet
|
| HOM_ElixhauserScores |
| Not Reviewed Yet
|
| FDA Medical Devices (2010) |
| Not Reviewed Yet
|
| Exposure Ontology |
| Not Reviewed Yet
|
| vertebrate Homologous Organ Groups |
| Not Reviewed Yet
|
| Traditional Medicine Meridian Value Sets |
| Not Reviewed Yet
|
| Traditional Medicine Signs and Symptoms Value Set |
| Not Reviewed Yet
|
| Traditional Medicine Other Factors Value Set |
| Not Reviewed Yet
|
| Traditional Medicine Constitution Value Set |
| Not Reviewed Yet
|
| Host Pathogen Interactions Ontology |
| Not Reviewed Yet
|
| Anatomical Entity Ontology |
| Not Reviewed Yet
|
| Pharmacovigilance Ontology |
| Not Reviewed Yet
|
| Ontology of Medically Related Social Entities |
| Not Reviewed Yet
|
| Cognitive Paradigm Ontology |
| Not Reviewed Yet
|
| Vertebrate Skeletal Anatomy Ontology |
| Not Reviewed Yet
|
| ICD10CM |
| Not Reviewed Yet
|
| Reproductive trait and phenotype ontology |
| Not Reviewed Yet
|
| PHArmacogenomic RElationships Ontology |
| Not Reviewed Yet
|
| Wheat trait |
| Not Reviewed Yet
|
| Crop Ontology |
| Not Reviewed Yet
|
| Cell line ontology [by Mahadevan] |
| Not Reviewed Yet
|
| Ontology for Drug Discovery Investigations |
| Not Reviewed Yet
|
| Neural-Immune Gene Ontology |
| Not Reviewed Yet
|
| Role Ontology |
| Not Reviewed Yet
|
| Brucellosis Ontology |
| Not Reviewed Yet
|
| Terminology of Anatomy of Human Embryology |
| Not Reviewed Yet
|
| Terminology of Anatomy of Human Histology |
| Not Reviewed Yet
|
| apollo-akesios |
| Not Reviewed Yet
|
| BioAssay Ontology |
| Not Reviewed Yet
|
| SemanticScience Integrated Ontology |
| Not Reviewed Yet
|
| Animal natural history and life history |
| Not Reviewed Yet
|
| Healthcare Common Procedure Coding System |
| Not Reviewed Yet
|
| HUGO |
| Not Reviewed Yet
|
| Veterans Health Administration National Drug File |
| Not Reviewed Yet
|
| CRISP Thesaurus, 2006 |
| Not Reviewed Yet
|
| Extensible Observation Ontology |
| Not Reviewed Yet
|
| Santa Barbara Coastal Observation Ontology |
| Not Reviewed Yet
|
| BioPAX |
| Not Reviewed Yet
|
| Neural Motor Recovery Ontology |
| Not Reviewed Yet
|
| Leukocyte Surface Markers |
| Not Reviewed Yet
|
| Human developmental anatomy, abstract version, v2 |
| Not Reviewed Yet
|
| ICD10 |
| Not Reviewed Yet
|
| Interaction Network Ontology |
| Not Reviewed Yet
|
| Metathesaurus CPT Hierarchical Terms |
| Not Reviewed Yet
|
| ICPS Network |
| Not Reviewed Yet
|
| Cell Cycle Ontology |
| Not Reviewed Yet
|
| Gene Ontology Extension |
| Not Reviewed Yet
|
| Ontology for MicroRNA Target Prediction |
| Not Reviewed Yet
|
| Current Procedural Terminology |
| Not Reviewed Yet
|
| Neomark Oral Cancer-Centred Ontology |
| Not Reviewed Yet
|
| RNA ontology |
| Not Reviewed Yet
|
| Bioinformatics operations, types of data, formats, and topics |
| Not Reviewed Yet
|
| PMA 2010 |
| Not Reviewed Yet
|
| Tissue Microarray Ontology |
| Not Reviewed Yet
|
| IMGT-ONTOLOGY |
| Not Reviewed Yet
|
| Platynereis stage ontology |
| Not Reviewed Yet
|
| Ontology of Adverse Events |
| Not Reviewed Yet
|
| SysMO-JERM |
| Not Reviewed Yet
|
| Body System |
| Not Reviewed Yet
|
| International Classification of External Causes of Injuries |
| Not Reviewed Yet
|
| Translational Medicine Ontology |
| Not Reviewed Yet
|
| Health Level Seven |
| Not Reviewed Yet
|
| Chemical Information Ontology |
| Not Reviewed Yet
|
| General Formal Ontology: Biology |
| Not Reviewed Yet
|
| General Formal Ontology |
| Not Reviewed Yet
|
| Breast tissue cell lines |
| Not Reviewed Yet
|
| AI/RHEUM |
| Not Reviewed Yet
|
| ICPC-2 PLUS |
| Not Reviewed Yet
|
| Nursing Interventions Classification (NIC) |
| Not Reviewed Yet
|
| Read Codes, Clinical Terms Version 3 (CTV3) |
| Not Reviewed Yet
|
| Master Drug Data Base |
| Not Reviewed Yet
|
| ICD-10-PCS |
| Not Reviewed Yet
|
| National Drug Data File |
| Not Reviewed Yet
|
| RxNORM |
| Not Reviewed Yet
|
| MedDRA |
| Not Reviewed Yet
|
| Taxonomic rank vocabulary |
| Not Reviewed Yet
|
| Terminological and ontological Knowledge resources |
| Not Reviewed Yet
|
| Influenza Ontology |
| Not Reviewed Yet
|
| Common Terminology Criteria for Adverse Events |
| Not Reviewed Yet
|
| Ontology for General Medical Science |
| Not Reviewed Yet
|
| Software Ontology |
| Not Reviewed Yet
|
| International Classification of Functioning, Disability and Health (ICF) |
| Not Reviewed Yet
|
| Kinetic Simulation Algorithm Ontology |
| Not Reviewed Yet
|
| PKO_Re |
| Not Reviewed Yet
|
| Terminology for the Description of Dynamics |
| Not Reviewed Yet
|
| Uber anatomy ontology |
| Not Reviewed Yet
|
| NIF Cell |
| Not Reviewed Yet
|
| International Classification for Nursing Practice |
| Not Reviewed Yet
|
| Ontology of Language Disorder in Autism |
| Not Reviewed Yet
|
| Gazetteer |
| Not Reviewed Yet
|
| Syndromic Surveillance Ontology |
| Not Reviewed Yet
|
| Information Artifact Ontology |
| Not Reviewed Yet
|
| NIF Dysfunction |
| Not Reviewed Yet
|
| NCI Thesaurus |
| Not Reviewed Yet
|
| Infectious Disease Ontology |
| Not Reviewed Yet
|
| Mouse pathology |
| Not Reviewed Yet
|
| Foundational Model of Anatomy |
| Not Reviewed Yet
|
| NanoParticle Ontology |
| Not Reviewed Yet
|
| RadLex |
| Not Reviewed Yet
|
| Ontology of Glucose Metabolism Disorder |
| Not Reviewed Yet
|
| Mosquito insecticide resistance |
| Not Reviewed Yet
|
| Cell type |
| Not Reviewed Yet
|
| Cereal plant gross anatomy |
| Not Reviewed Yet
|
| Yeast phenotypes |
| Not Reviewed Yet
|
| Evidence codes |
| Not Reviewed Yet
|
| Basic Vertebrate Anatomy |
| Not Reviewed Yet
|
| Amino Acid |
| Not Reviewed Yet
|
| Pathway ontology |
| Not Reviewed Yet
|
| Microarray and Gene Expression Data Ontology |
| Not Reviewed Yet
|
| Mammalian phenotype |
| Not Reviewed Yet
|
| Neuroscience Information Framework Standard ontology |
| Not Reviewed Yet
|
| Pathogen transmission |
| Not Reviewed Yet
|
| Human disease ontology |
| Not Reviewed Yet
|
| Cell Line Ontology |
| Not Reviewed Yet
|
| International Classification of Diseases |
| Not Reviewed Yet
|
| Rat Strain Ontology |
| Not Reviewed Yet
|
| Ontology of Geographical Region |
| Not Reviewed Yet
|
| Subcellular Anatomy Ontology (SAO) |
| Not Reviewed Yet
|
| Dictyostelium discoideum anatomy |
| Not Reviewed Yet
|
| Situation-Based Access Control |
| Not Reviewed Yet
|
| Protein-protein interaction |
| Not Reviewed Yet
|
| Mass spectrometry |
| Not Reviewed Yet
|
| Proteomics data and process provenance |
| Not Reviewed Yet
|
| Smoking Behavior Risk Ontology |
| Not Reviewed Yet
|
| Ascomycete phenotype ontology |
| Not Reviewed Yet
|
| MaHCO - An MHC Ontology |
| Not Reviewed Yet
|
| Vaccine Ontology |
| Not Reviewed Yet
|
| Comparative Data Analysis Ontology |
| Not Reviewed Yet
|
| Cardiac Electrophysiology Ontology |
| Not Reviewed Yet
|
| Skin Physiology Ontology |
| Not Reviewed Yet
|
| Online Mendelian Inheritance in Man |
| Not Reviewed Yet
|
| FlyBase Controlled Vocabulary |
| Not Reviewed Yet
|
| Spider Ontology |
| Not Reviewed Yet
|
| Ontology for disease genetic investigation |
| Not Reviewed Yet
|
| PhysicalFields |
| Not Reviewed Yet
|
| Units of measurement |
| Not Reviewed Yet
|
| Epoch Clinical Trial Ontologies |
| Not Reviewed Yet
|
| Cancer Research and Management ACGT Master Ontology |
| Not Reviewed Yet
|
| Multiple alignment |
| Not Reviewed Yet
|
| Lipid Ontology |
| Not Reviewed Yet
|
| Basic Formal Ontology |
| Not Reviewed Yet
|
| Galen |
| Not Reviewed Yet
|
| Environment Ontology |
| Not Reviewed Yet
|
| C. elegans phenotype |
| Not Reviewed Yet
|
| ABA Adult Mouse Brain |
| Not Reviewed Yet
|
| Fungal gross anatomy |
| Not Reviewed Yet
|
| Ontology of homology and related concepts in biology |
| Not Reviewed Yet
|
| NCBI organismal classification |
| Not Reviewed Yet
|
| Plant Structure Development Stage |
| Not Reviewed Yet
|
| BioPortal Metadata |
| Not Reviewed Yet
|
| Habronattus courtship |
| Not Reviewed Yet
|
| Amphibian gross anatomy |
| Not Reviewed Yet
|
| Drosophila gross anatomy |
| Not Reviewed Yet
|
| Mouse gross anatomy and development |
| Not Reviewed Yet
|
| Event (INOH pathway ontology) |
| Not Reviewed Yet
|
| WHO Adverse Reaction Terminology |
| Not Reviewed Yet
|
| Medaka fish anatomy and development |
| Not Reviewed Yet
|
| Amphibian taxonomy |
| Not Reviewed Yet
|
| Parasite Experiment Ontology |
| Not Reviewed Yet
|
| Malaria Ontology |
| Not Reviewed Yet
|
| DermLex: The Dermatology Lexicon |
| Not Reviewed Yet
|
| eVOC (Expressed Sequence Annotation for Humans) |
| Not Reviewed Yet
|
| OBO relationship types |
| Not Reviewed Yet
|
| Xenopus anatomy and development |
| Not Reviewed Yet
|
| Symptom Ontology |
| Not Reviewed Yet
|
| Physico-chemical methods and properties |
| Not Reviewed Yet
|
| Human developmental anatomy, timed version |
| Not Reviewed Yet
|
| SNOMED Clinical Terms |
| Not Reviewed Yet
|
| Suggested Ontology for Pharmacogenomics |
| Not Reviewed Yet
|
| International Classification of Primary Care |
| Not Reviewed Yet
|
| Breast Cancer Grading Ontology |
| Not Reviewed Yet
|
| Coding Symbols for a Thesaurus of Adverse Reaction Terms |
| Not Reviewed Yet
|
| Protein Ontology [by Sidhu] |
| Not Reviewed Yet
|
| Computer-based Patient Record Ontology |
| Not Reviewed Yet
|
| National Drug File |
| Not Reviewed Yet
|
| Proteomics Pipeline Infrastructure for CPTAC |
| Not Reviewed Yet
|
| Sequence types and features |
| Not Reviewed Yet
|
| Plant environmental conditions |
| Not Reviewed Yet
|
| Ontology for Parasite LifeCycle |
| Not Reviewed Yet
|
| Physician Data Query |
| Not Reviewed Yet
|
| Cereal Plant Development |
| Not Reviewed Yet
|
| Maize gross anatomy |
| Not Reviewed Yet
|
| C. elegans gross anatomy |
| Not Reviewed Yet
|
| Teleost taxonomy |
| Not Reviewed Yet
|
| Phenotypic quality |
| Not Reviewed Yet
|
| Gene Regulation Ontology |
| Not Reviewed Yet
|
| Logical Observation Identifier Names and Codes |
| Not Reviewed Yet
|
| Plant Trait Ontology |
| Not Reviewed Yet
|
| Zebrafish anatomy and development |
| Not Reviewed Yet
|
| Systems Biology |
| Not Reviewed Yet
|
| Human developmental anatomy, abstract version |
| Not Reviewed Yet
|
| Biological imaging methods |
| Not Reviewed Yet
|
| Human Phenotype Ontology |
| Not Reviewed Yet
|
| Dendritic cell |
| Not Reviewed Yet
|
| Biomedical Resource Ontology |
| Not Reviewed Yet
|
| Bleeding History Phenotype |
| Not Reviewed Yet
|
| Molecule role (INOH Protein name/family name ontology) |
| Not Reviewed Yet
|
| Mosquito gross anatomy |
| Not Reviewed Yet
|
| Hymenoptera Anatomy Ontology |
| Not Reviewed Yet
|
| Teleost Anatomy Ontology |
| Not Reviewed Yet
|
| Ontology of Clinical Research (OCRe) |
| Not Reviewed Yet
|
| BIRNLex |
| Not Reviewed Yet
|
| Fly taxonomy |
| Not Reviewed Yet
|
| Physico-chemical process |
| Not Reviewed Yet
|
| Neural ElectroMagnetic Ontology |
| Not Reviewed Yet
|
| Common Anatomy Reference Ontology |
| Not Reviewed Yet
|
| Minimal anatomical terminology |
| Not Reviewed Yet
|
| BRENDA tissue / enzyme source |
| Not Reviewed Yet
|
| MedlinePlus Health Topics |
| Not Reviewed Yet
|
| Sample processing and separation techniques |
| Not Reviewed Yet
|
| Ontology of Physics for Biology |
| Not Reviewed Yet
|
| Experimental Factor Ontology |
| Not Reviewed Yet
|
| Ontology for Genetic Interval |
| Not Reviewed Yet
|
| Bilateria anatomy |
| Not Reviewed Yet
|
| Plant Anatomy |
| Not Reviewed Yet
|
| Family Health History Ontology |
| Not Reviewed Yet
|
| Gene Ontology |
| Not Reviewed Yet
|
| C. elegans development |
| Not Reviewed Yet
|
| Pseudogene |
| Not Reviewed Yet
|
| Mobile genetic element ontology |
| Not Reviewed Yet
|
| Loggerhead nesting |
| Not Reviewed Yet
|
| Chemical entities of biological interest |
| Not Reviewed Yet
|
| GeoSpecies Ontology |
| Not Reviewed Yet
|
| Spatial Ontology |
| Not Reviewed Yet
|
| BioTop |
| Not Reviewed Yet
|
| African Traditional Medicine |
| Not Reviewed Yet
|
| SNP-Ontology |
| Not Reviewed Yet
|
| Ontology for Biomedical Investigations |
| Not Reviewed Yet
|
| Tick gross anatomy |
| Not Reviewed Yet
|
| Mouse adult gross anatomy |
| Not Reviewed Yet
|
| PRotein Ontology |
| Not Reviewed Yet
|
| Protein modification |
| Not Reviewed Yet
|
| Electrocardiography Ontology |
| Not Reviewed Yet
|
| Medical Subject Headings (MeSH) |
| Not Reviewed Yet
|
| NMR-instrument specific component of metabolomics investigations |
| Not Reviewed Yet
|
| Drosophila development |
| Not Reviewed Yet
|
| Cell Behavior Ontology |
| Not Reviewed Yet
|