Combined Phenotype Ontology

Last uploaded: November 18, 2021
Preferred Name

superior colliculus

Synonyms

optic tectum

anterior corpus quadrigeminum

cranial colliculus

anterior colliculus

strata (grisea et alba) colliculi cranialis

colliculus bigeminalis oralis

layers of the superior colliculus

corpora bigemina

colliculus rostralis

lobus opticus

corpus quadrigeminum superius

tectum opticum

colliculus superior

tectal lobe

strata (grisea et alba) colliculi superioris

dorsal midbrain

colliculus cranialis

nates

optic lobe

tectum

Definitions

). In hagfish, lamprey, and shark it is a relatively small structure, but in teleost fish it is greatly expanded, in some cases becoming the largest structure in the brain. (See the adjoining drawing of a codfish brain.) In amphibians, reptiles, and especially birds it is also a very significant component, but in mammals it is dwarfed by the massive expansion of the cerebral cortex. Part of the midbrain tecturm consisting of paired bodies that sit caudal to the thalamus and surround the pineal gland in the mesencephalon of vertebrate brains. It comprises the rostral aspect of the midbrain, posterior to the periaqueductal gray and adjacent superior the inferior colliculus. The inferior and superior colliculi are known collectively as the corpora quadrigemina (Latin, quadruplet bodies). It consists of several identified cellular layers and also comprises the brachium of the superior colliculus and commissure of supeior colliculus from Wikipedia.org and Neuronames (MM).

ID

http://purl.obolibrary.org/obo/UBERON_0001945

comment

). In hagfish, lamprey, and shark it is a relatively small structure, but in teleost fish it is greatly expanded, in some cases becoming the largest structure in the brain. (See the adjoining drawing of a codfish brain.) In amphibians, reptiles, and especially birds it is also a very significant component, but in mammals it is dwarfed by the massive expansion of the cerebral cortex.

database_cross_reference

BM:MB-Tec-SC

ZFA:0000445

MESH:D013477

EMAPA:32869

neuronames:473

TAO:0000445

XAO:0003226

EFO:0002474

BTO:0000965

BIRNLEX:1040

AAO:0010609

UMLS:C0228405

Wikipedia:Superior_colliculus

BAMS:SC

DHBA:12292

DMBA:16678

EV:0100245

FMA:62403

GAID:576

HBA:9114

MA:0001068

definition

Part of the midbrain tecturm consisting of paired bodies that sit caudal to the thalamus and surround the pineal gland in the mesencephalon of vertebrate brains. It comprises the rostral aspect of the midbrain, posterior to the periaqueductal gray and adjacent superior the inferior colliculus. The inferior and superior colliculi are known collectively as the corpora quadrigemina (Latin, quadruplet bodies). It consists of several identified cellular layers and also comprises the brachium of the superior colliculus and commissure of supeior colliculus from Wikipedia.org and Neuronames (MM).

depiction

https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb

https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb

http://upload.wikimedia.org/wikipedia/commons/d/da/Cn3nucleus.png

has exact synonym

optic tectum

anterior corpus quadrigeminum

cranial colliculus

anterior colliculus

has related synonym

strata (grisea et alba) colliculi cranialis

optic tectum

colliculus bigeminalis oralis

layers of the superior colliculus

corpora bigemina

colliculus rostralis

lobus opticus

corpus quadrigeminum superius

tectum opticum

colliculus superior

tectal lobe

strata (grisea et alba) colliculi superioris

dorsal midbrain

colliculus cranialis

nates

optic lobe

tectum

has_obo_namespace

uberon

id

UBERON:0001945

in lateral side of

http://purl.obolibrary.org/obo/UBERON_0002314

in_subset

http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas

http://purl.obolibrary.org/obo/uberon/core#efo_slim

http://purl.obolibrary.org/obo/uberon/core#vertebrate_core

http://purl.obolibrary.org/obo/uberon/core#pheno_slim

http://purl.obolibrary.org/obo/uberon/core#uberon_slim

label

superior colliculus

notation

UBERON:0001945

part_of

http://purl.obolibrary.org/obo/UBERON_0002314

http://purl.obolibrary.org/obo/UBERON_0002259

prefixIRI

UBERON:0001945

prefLabel

superior colliculus

RO_0002175

http://purl.obolibrary.org/obo/NCBITaxon_9606

treeView

http://purl.obolibrary.org/obo/UBERON_0002314

http://purl.obolibrary.org/obo/UBERON_0002259

UBPROP_0000001

The brain structure where the two separate inputs from the two eyes are combined into a single, integrated map.[AAO]

The roof of the midbrain, morphologically visible by the end of the segmentation period. Kimmel et al, 1995.[TAO]

UBPROP_0000008

The term SC is used when discussing mammals, and OT for other vertebrates[WP]

The tectum is a layered structure, with a number of layers that vary by species. The superficial layers are sensory-related, and receive input from the eyes as well as other sensory systems.[1] The optic tectum is one of the fundamental components of the vertebrate brain, existing across the full range of species from hagfish to human.[4] (See the brain article for background.) Some aspects of the structure are very consistent, including a structure composed of a number of layers, with a dense input from the optic nerve to the superficial layers and another strong input conveying somatosensory input to deeper layers. Other aspects are highly variable, such as the total number of layers (from 3 in the African lungfish to 15 in the goldfish[5]), and the number of different types of cells (from 2 in the lungfish to 27 in the house sparrow[5]

disjointWith

http://purl.obolibrary.org/obo/UBERON_0001946

subClassOf

http://purl.obolibrary.org/obo/UBERON_0015212

http://purl.obolibrary.org/obo/UBERON_0002616

http://purl.obolibrary.org/obo/UBERON_0006794

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Delete Mapping To Ontology Source
http://purl.obolibrary.org/obo/UBERON_0001945 EFO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001945 UBERON SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001945 OBA SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001945 GO-PLUS SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001945 NPOKB SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001945 EFO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001945 EPIO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001945 BERO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001945 NIFSTD SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001945 CCF SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001945 FNS-H SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001945 EFO LOOM
http://purl.obolibrary.org/obo/UBERON_0001945 GO-PLUS LOOM
http://purl.obolibrary.org/obo/UBERON_0001945 UBERON LOOM
http://purl.obolibrary.org/obo/UBERON_0001945 OBA LOOM
http://localhost/plosthes.2017-1#5526 PLOSTHES LOOM
http://sbmi.uth.tmc.edu/ontology/ochv#C0038827 OCHV LOOM
http://cocomac.g-node.org/services/custom_sql_query.php?sql=SELECT%20*%20from%20BrainMaps_BrainSiteAcronyms%20where%20ID=1948 NIFSTD LOOM
http://purl.obolibrary.org/obo/MA_0001068 MA LOOM
http://bioontology.org/projects/ontologies/birnlex#birnlex_1040 BIRNLEX LOOM
http://purl.org/sig/ont/fma/fma62403 FMA LOOM
http://purl.org/obo/owlapi/fma#FMA_62403 BIOMODELS LOOM
http://cocomac.g-node.org/services/custom_sql_query.php?sql=SELECT%20*%20from%20BrainMaps_BrainSiteAcronyms%20where%20ID=463 NIFSTD LOOM
http://purl.obolibrary.org/obo/EMAPA_32869 EMAPA LOOM
http://ontology.apa.org/apaonto/termsonlyOUT%20(5).owl#Superior_Colliculus APAONTO LOOM
http://purl.jp/bio/4/id/200906062914653128 IOBC LOOM
http://www.semanticweb.org/ontologies/2009/9/Ontology1255357986125.owl#Superior_colliculus BRCT LOOM
http://purl.obolibrary.org/obo/FMA_62403 NIO LOOM
http://uri.neuinfo.org/nif/nifstd/birnlex_1040 NIFSTD LOOM
http://cocomac.g-node.org/services/custom_sql_query.php?sql=SELECT%20*%20from%20BrainMaps_BrainSiteAcronyms%20where%20ID=755 NIFSTD LOOM
http://sbmi.uth.tmc.edu/ontology/ochv#11891 OCHV LOOM
http://purl.bioontology.org/ontology/CSP/0479-2668 CRISP LOOM
http://uri.interlex.org/paxinos/uris/rat/labels/949 NIFSTD LOOM
http://purl.obolibrary.org/obo/UBERON_0001945 NPOKB LOOM
http://purl.obolibrary.org/obo/UBERON_0001945 EFO LOOM
http://purl.obolibrary.org/obo/UBERON_0001945 EPIO LOOM
http://purl.obolibrary.org/obo/UBERON_0001945 NIFSTD LOOM
http://purl.obolibrary.org/obo/UBERON_0001945 CCF LOOM
http://purl.obolibrary.org/obo/UBERON_0001945 FNS-H LOOM
http://www.co-ode.org/ontologies/galen#SuperiorColliculus GALEN LOOM
http://radlex.org/RID/RID6783 RADLEX LOOM