Combined Phenotype Ontology

Last uploaded: November 18, 2021
Preferred Name

cilium

Synonyms

eukaryotic flagellum

microtubule-based flagellum

flagellum

primary cilium

Definitions

Note that we deem cilium and microtubule-based flagellum to be equivalent. In most eukaryotic species, intracellular sub-components of the cilium, such as the ciliary base and rootlet, are located near the plasma membrane. In Diplomonads such as Giardia, instead, the same ciliary parts are located further intracellularly. Also, 'cilium' may be used when axonemal structure and/or motility are unknown, or when axonemal structure is unusual. For all other cases, please refer to children of 'cilium'. Finally, note that any role of ciliary proteins in sensory events should be captured by annotating to relevant biological process terms. A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface and of some cytoplasmic parts. Each cilium is largely bounded by an extrusion of the cytoplasmic (plasma) membrane, and contains a regular longitudinal array of microtubules, anchored to a basal body.

ID

http://purl.obolibrary.org/obo/GO_0005929

comment

Note that we deem cilium and microtubule-based flagellum to be equivalent. In most eukaryotic species, intracellular sub-components of the cilium, such as the ciliary base and rootlet, are located near the plasma membrane. In Diplomonads such as Giardia, instead, the same ciliary parts are located further intracellularly. Also, 'cilium' may be used when axonemal structure and/or motility are unknown, or when axonemal structure is unusual. For all other cases, please refer to children of 'cilium'. Finally, note that any role of ciliary proteins in sensory events should be captured by annotating to relevant biological process terms.

database_cross_reference

NIF_Subcellular:sao787716553

Wikipedia:Cilium

FMA:67181

definition

A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface and of some cytoplasmic parts. Each cilium is largely bounded by an extrusion of the cytoplasmic (plasma) membrane, and contains a regular longitudinal array of microtubules, anchored to a basal body.

has exact synonym

eukaryotic flagellum

microtubule-based flagellum

has part

http://purl.obolibrary.org/obo/GO_0030990

has related synonym

flagellum

has_alternative_id

GO:0072372

has_narrow_synonym

primary cilium

has_obo_namespace

cellular_component

id

GO:0005929

in_subset

http://purl.obolibrary.org/obo/go#goslim_generic

http://purl.obolibrary.org/obo/go#goslim_pir

http://purl.obolibrary.org/obo/go#goslim_chembl

http://purl.obolibrary.org/obo/go#goslim_drosophila

label

cilium

notation

GO:0005929

only in taxon

http://purl.obolibrary.org/obo/NCBITaxon_2759

prefixIRI

GO:0005929

prefLabel

cilium

RO_0002161

http://purl.obolibrary.org/obo/NCBITaxon_5782

http://purl.obolibrary.org/obo/NCBITaxon_4890

http://purl.obolibrary.org/obo/NCBITaxon_3312

http://purl.obolibrary.org/obo/NCBITaxon_3176

http://purl.obolibrary.org/obo/NCBITaxon_3398

http://purl.obolibrary.org/obo/NCBITaxon_3378

subClassOf

http://purl.obolibrary.org/obo/GO_0120025

http://purl.obolibrary.org/obo/GO_0043227

http://purl.obolibrary.org/obo/PR_000050567

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Delete Mapping To Ontology Source
http://purl.obolibrary.org/obo/GO_0005929 PATO SAME_URI
http://purl.obolibrary.org/obo/GO_0005929 UBERON SAME_URI
http://purl.obolibrary.org/obo/GO_0005929 OBA SAME_URI
http://purl.obolibrary.org/obo/GO_0005929 NIGO SAME_URI
http://purl.obolibrary.org/obo/GO_0005929 CL SAME_URI
http://purl.obolibrary.org/obo/GO_0005929 EFO SAME_URI
http://purl.obolibrary.org/obo/GO_0005929 RBO SAME_URI
http://purl.obolibrary.org/obo/GO_0005929 GO-EXT SAME_URI
http://purl.obolibrary.org/obo/GO_0005929 PORO SAME_URI
http://purl.obolibrary.org/obo/GO_0005929 CLO SAME_URI
http://purl.obolibrary.org/obo/GO_0005929 PLANP SAME_URI
http://purl.obolibrary.org/obo/GO_0005929 CCONT SAME_URI
http://purl.obolibrary.org/obo/GO_0005929 FOVT SAME_URI
http://purl.obolibrary.org/obo/GO_0005929 CCO SAME_URI
http://purl.obolibrary.org/obo/GO_0005929 REXO SAME_URI
http://purl.obolibrary.org/obo/GO_0005929 HSPO SAME_URI
http://purl.obolibrary.org/obo/GO_0005929 GEXO SAME_URI
http://purl.obolibrary.org/obo/GO_0005929 XPO SAME_URI
http://purl.obolibrary.org/obo/GO_0005929 PHAGE SAME_URI
http://purl.obolibrary.org/obo/GO_0005929 CMPO SAME_URI
http://purl.obolibrary.org/obo/GO_0005929 PCL SAME_URI
http://purl.obolibrary.org/obo/GO_0005929 PATO SAME_URI
http://purl.obolibrary.org/obo/GO_0005929 NIFDYS SAME_URI
http://purl.obolibrary.org/obo/GO_0005929 CTENO SAME_URI
http://purl.obolibrary.org/obo/GO_0005929 BERO SAME_URI
http://purl.obolibrary.org/obo/GO_0005929 HHEAR SAME_URI
http://purl.obolibrary.org/obo/GO_0005929 OBA SAME_URI
http://purl.obolibrary.org/obo/GO_0005929 GO SAME_URI
http://purl.obolibrary.org/obo/GO_0005929 NIFSTD SAME_URI
http://purl.obolibrary.org/obo/GO_0005929 KTAO SAME_URI
http://purl.obolibrary.org/obo/GO_0005929 REGN_GO SAME_URI
http://purl.obolibrary.org/obo/GO_0005929 RETO SAME_URI
http://purl.obolibrary.org/obo/GO_0005929 MAXO SAME_URI
http://purl.obolibrary.org/obo/GO_0005929 GO-PLUS SAME_URI
http://purl.obolibrary.org/obo/GO_0005929 ZP SAME_URI
http://purl.obolibrary.org/obo/GO_0005929 AISM SAME_URI
http://purl.obolibrary.org/obo/GO_0005929 NMDCO SAME_URI
http://purl.obolibrary.org/obo/GO_0005929 PATO LOOM
http://purl.obolibrary.org/obo/GO_0005929 UBERON LOOM
http://purl.obolibrary.org/obo/GO_0005929 OBA LOOM
http://purl.obolibrary.org/obo/NCIT_C32318 BERO LOOM
http://purl.obolibrary.org/obo/PLANA_0002024 PLANA LOOM
http://purl.obolibrary.org/obo/PLANA_0002024 PLANP LOOM
http://purl.obolibrary.org/obo/GO_0005929 NIGO LOOM
http://purl.obolibrary.org/obo/GO_0005929 CL LOOM
http://purl.obolibrary.org/obo/GO_0005929 EFO LOOM
http://purl.obolibrary.org/obo/GO_0005929 RBO LOOM
http://purl.obolibrary.org/obo/GO_0005929 GO-EXT LOOM
http://purl.obolibrary.org/obo/GO_0005929 PORO LOOM
http://purl.obolibrary.org/obo/GO_0005929 CLO LOOM
http://purl.obolibrary.org/obo/GO_0005929 PLANP LOOM
http://purl.obolibrary.org/obo/GO_0005929 CCONT LOOM
http://purl.obolibrary.org/obo/GO_0005929 FOVT LOOM
http://purl.obolibrary.org/obo/GO_0005929 CCO LOOM
http://purl.obolibrary.org/obo/GO_0005929 REXO LOOM
http://purl.obolibrary.org/obo/GO_0005929 HSPO LOOM
http://purl.obolibrary.org/obo/GO_0005929 GEXO LOOM
http://purl.obolibrary.org/obo/GO_0005929 XPO LOOM
http://purl.obolibrary.org/obo/GO_0005929 PHAGE LOOM
http://purl.obolibrary.org/obo/GO_0005929 CMPO LOOM
http://purl.obolibrary.org/obo/GO_0005929 PCL LOOM
http://purl.obolibrary.org/obo/GO_0005929 PATO LOOM
http://purl.obolibrary.org/obo/GO_0005929 NIFDYS LOOM
http://purl.obolibrary.org/obo/GO_0005929 CTENO LOOM
http://purl.obolibrary.org/obo/GO_0005929 BERO LOOM
http://purl.obolibrary.org/obo/GO_0005929 HHEAR LOOM
http://purl.obolibrary.org/obo/GO_0005929 OBA LOOM
http://purl.obolibrary.org/obo/GO_0005929 GO LOOM
http://purl.obolibrary.org/obo/GO_0005929 NIFSTD LOOM
http://purl.obolibrary.org/obo/GO_0005929 KTAO LOOM
http://purl.obolibrary.org/obo/GO_0005929 REGN_GO LOOM
http://purl.obolibrary.org/obo/GO_0005929 RETO LOOM
http://purl.obolibrary.org/obo/GO_0005929 MAXO LOOM
http://purl.obolibrary.org/obo/GO_0005929 GO-PLUS LOOM
http://purl.obolibrary.org/obo/GO_0005929 ZP LOOM
http://purl.obolibrary.org/obo/GO_0005929 AISM LOOM
http://purl.obolibrary.org/obo/GO_0005929 NMDCO LOOM
http://purl.org/obo/owlapi/fma#FMA_67181 BIOMODELS LOOM
http://www.co-ode.org/ontologies/galen#Cilium GALEN LOOM
http://purl.obolibrary.org/obo/CLAO_0001189 CLAO LOOM
http://www.projecthalo.com/aura#Cilium AURA LOOM
http://purl.org/obo/owl/GO#GO_0005929 BIOMODELS LOOM
http://purl.obolibrary.org/obo/XAO_0005008 XPO LOOM
http://purl.obolibrary.org/obo/XAO_0005008 XAO LOOM
http://www.phoc.org.cn/pmo/class/PMO_00053770 PMAPP-PMO LOOM
http://purl.org/sig/ont/fma/fma67181 FMA LOOM
http://purl.bioontology.org/ontology/CSP/0594-8648 CRISP LOOM
http://purl.jp/bio/4/id/200906012385631078 IOBC LOOM
http://ccdb.ucsd.edu/SAO/1.2#sao787716553 SAO LOOM
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C32318 NCIT LOOM
http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Subcellular.owl#sao787716553 NIFSUBCELL LOOM
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#Cilium SYN LOOM
http://purl.bioontology.org/ontology/SNOMEDCT/69315009 SNOMEDCT LOOM
http://purl.obolibrary.org/obo/ECAO_0104340 ECAO LOOM
http://uri.neuinfo.org/nif/nifstd/sao787716553 NIFSTD LOOM