Phylogenetic Ontology

Last uploaded: March 11, 2013
Preferred Name

Model

Synonyms
ID

http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Model

description

Model represents the footprint of evolutionary phenomenon that generated the data (such as mutation and selection) and provides framework through which the phylogenetic construction method estimates parameters to find the preferred tree. The specific model selected for a data set depends on features of the data such as level of variation and frequency. Benefits: •Overcome most of the phylogenetic scenarios. •Provide simplifications, summarizing many evolutionary forces and incorporation of these models leads to improvement in phylogenetic analysis. Example: Maximum likelihood, neighbor joining and Bayesian methods use models and benefit from them but maximum parsimony does not use models.

creator

MP,HY

label

Model

prefLabel

Model

source

Ref: •Nei M. Phylogenetic analysis in molecular evolutionary genetics. Ann Rev Genet 1996;30:371–403. •Kuhner MK, Felsenstein J. A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates. Mol Biol Evol 1994;11:459–68. •Huelsenbeck JP, Hillis DM. Success of phylogenetic methods in the four-taxon case. Syst Biol 1993;42:247–64. •Felsenstein J. Cases in which parsimony or compatibility methods will be positively misleading. Syst Zool 1978;27: 401–10.

subClassOf

http://www.w3.org/2002/07/owl#Thing

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http://purl.allotrope.org/ontologies/result#AFR_0000993 AFO LOOM
http://semanticscience.org/resource/SIO_000510 SIO LOOM
http://www.projecthalo.com/aura#Model AURA LOOM
http://ontologies.dbmi.pitt.edu/edda/StudyDesigns.owl#model EDDA LOOM
http://bioonto.de/ro2.owl#Model BIOMODELS LOOM
http://w3id.org/ontopbm#OntoPBM_00433 ONTOPBM LOOM
http://w3id.org/rv-ontology#Model RVO LOOM
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C16866 NCIT LOOM
http://vocabs.lter-europe.net/EnvThes/USLterCV_345 ENVTHES LOOM
http://purl.allotrope.org/ontologies/result#AFR_0000993 AFO LOOM
http://www.semanticweb.org/larisa/ontologies/2020/5/untitled-ontology-33#Model TML LOOM
http://purl.obolibrary.org/obo/RoleO_0419012 ROLEO LOOM
http://purl.obolibrary.org/obo/ExO_0000072 EXO LOOM
http://purl.bioontology.org/ontology/HL7/C3853906 HL7 LOOM
http://purl.bioontology.org/ontology/CSP/1944-9333 CRISP LOOM
http://vocab.fairdatacollective.org/gdmt/Model FDC-GDMT LOOM
http://vocab.fairdatacollective.org/gdmt/Model GDMT LOOM
http://www.ifomis.org/vdot/vdot_core.owl#vdot_0000002 VDOT LOOM
http://purl.org/ontology/breast_cancer_recommendation#Model BCSR-ONTO LOOM
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C43383 NCIT LOOM
http://purl.obolibrary.org/obo/NCIT_C16866 PREMEDONTO LOOM
http://purl.obolibrary.org/obo/NCIT_C16866 COVID-19 LOOM
http://purl.obolibrary.org/obo/NCIT_C16866 EPIO LOOM
http://purl.obolibrary.org/obo/NCIT_C16866 GENEPIO LOOM
http://sweetontology.net/reprSciModel/Model SWEET LOOM
http://scai.fraunhofer.de/NDDUO#model ADO LOOM
http://scai.fraunhofer.de/NDDUO#model PE-O LOOM
http://purl.org/incf/ontology/Computational_Neurosciences/cno_alpha.owl#cno_0000180 CNO LOOM
http://purl.org/incf/ontology/Computational_Neurosciences/cno_alpha.owl#cno_0000180 CNO_ACRONYM LOOM
http://purl.org/obo/owl/SBO#SBO_0000004 HUPSON LOOM
http://purl.obolibrary.org/obo/OCCO_41901200 OCCO LOOM
http://purl.org/datacite/v4.4/Model DATACITE-VOCAB LOOM
http://neurolog.unice.fr/ontoneurolog/v3.0/ontoneurolog-extension-of-dolce.owl#model ONL-MSA LOOM
http://neurolog.unice.fr/ontoneurolog/v3.0/ontoneurolog-extension-of-dolce.owl#model OntoVIP LOOM
http://neurolog.unice.fr/ontoneurolog/v3.0/ontoneurolog-extension-of-dolce.owl#model ONL-MR-DA LOOM
http://neurolog.unice.fr/ontoneurolog/v3.0/ontoneurolog-extension-of-dolce.owl#model ONL-DP LOOM
https://w3id.org/reproduceme#Model REPRODUCE-ME LOOM
https://w3id.org/gdmt/Model GDMT LOOM
http://purl.obolibrary.org/obo/GSSO_005860 GSSO LOOM
http://purl.obolibrary.org/obo/RoleO_0000331 ROLEO LOOM
http://www.knowledgegrid.org/koro#KORO_311 KORO LOOM
http://purl.obolibrary.org/obo/WC#_model_target_provenance WC LOOM
http://hadatac.org/ont/vstoi#Model HHEARP LOOM
http://hadatac.org/ont/vstoi#Model CHEAR LOOM
http://hadatac.org/ont/vstoi#Model SCO LOOM
http://hadatac.org/ont/vstoi#Model HHEAR LOOM
http://hadatac.org/ont/vstoi#Model HASCO LOOM
http://purl.obolibrary.org/obo/WC_model WC LOOM
http://purl.bioontology.org/ontology/HOIP/HOIP_0050431 HOIP LOOM
http://purl.bioontology.org/net/brunel/panda#Model PANDA LOOM
http://purl.obolibrary.org/obo/NCIT_C43383 PREMEDONTO LOOM
http://purl.jp/bio/4/id/200906081729418877 IOBC LOOM
http://vocabs.lter-europe.net/EnvThes/20303 ENVTHES LOOM
http://www.semanticweb.org/mantx/ontologies/Process.owl#Model HDMPONTO LOOM
https://w3id.org/BCI-ontology#Model BCI-O LOOM
http://jermontology.org/ontology/JERMOntology#Model JERM LOOM
http://semanticscience.org/resource/SIO_000510 HHEARP LOOM
http://semanticscience.org/resource/SIO_000510 CHEAR LOOM
http://semanticscience.org/resource/SIO_000510 BIOMO LOOM
http://semanticscience.org/resource/SIO_000510 SCO LOOM
http://semanticscience.org/resource/SIO_000510 HHEAR LOOM
http://semanticscience.org/resource/SIO_000510 GSSO LOOM
http://semanticscience.org/resource/SIO_000510 HASCO LOOM
http://purl.enanomapper.org/onto/ENM_8000076 ENM LOOM