Neuroscience Information Framework (NIF) Standard Ontology

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Preferred Name	Organism
ID	http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_376
Obsolete	true
createdDate	2006-10-11
deprecated	true
hasBirnlexCurator	http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug
hasCurationStatus	http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary
hasFormerChildClass	http://purl.org/nbirn/birnlex/ontology/#birnOrganismTaxon_89
hasFormerParentClass	http://ontology.neuinfo.org/NIF/Backend/BIRNLex-OBO-UBO.owl#birnlex_2
history note	This was a redundant class, it's former children have been set as subclasses of the BIRNLex-OBO-UBO Organism class birn_obo_obu_5 (BB - 2007-08-03).
isReplacedByClass	http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_2
label	Organism
modifiedDate	2007-08-03
ncbiTaxScientificName	Organism
pendingActionNote	This part of the graph will need to adjust as organism taxonomy is handled more consistently by the bio-ontology community
preferred label	Organism
prefixIRI	p11:birnlex_376
subClassOf	http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#_birnlex_retired_class

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Mapping To	Ontology	Source
http://semanticscience.org/resource/SIO_010000	Gene Expression Ontology	LOOM
http://semanticscience.org/resource/SIO_010000	Semanticscience Integrated Ontology	LOOM
http://semanticscience.org/resource/SIO_010000	Regulation of Gene Expression Ontolology	LOOM
http://semanticscience.org/resource/SIO_010000	Orthology Ontology	LOOM
http://semanticscience.org/resource/SIO_010000	Biological Observation Matrix Ontology	LOOM
http://www.icn.ch/icnp#Organism	International Classification for Nursing Practice	LOOM
http://www.owl-ontologies.com/MO.owl#Organism	Monogenean Ontology	LOOM
http://purl.bioontology.org/net/brunel/panda#Organism	Probabilistic Knowledge Assembly Ontology	LOOM
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#Organisms	Cigarette Smoke Exposure Ontology	LOOM
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#Organisms	Sage Bionetworks Synapse Ontology	LOOM
http://bioontology.org/projects/ontologies/birnlex#birnlex_376	Biomedical Informatics Research Network Project Lexicon	LOOM
http://purl.obolibrary.org/obo/CiinteA_0000795	Ciona intestinalis Anatomy and Development Ontology	LOOM
http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Organism	General Formal Ontology for Biology	LOOM
http://www.stanford.edu/~coulet/phare.owl#Organism	Pharmacogenomic Relationships Ontology	LOOM
http://ontology.neuinfo.org/NIF/Backend/BIRNLex-OBO-UBO.owl#birnlex_2	Neuroscience Information Framework (NIF) Subcellular Ontology	LOOM
http://ontology.neuinfo.org/NIF/Backend/BIRNLex-OBO-UBO.owl#birnlex_2	Autism DSM-ADI-R ontology	LOOM
http://ontology.neuinfo.org/NIF/Backend/BIRNLex-OBO-UBO.owl#birnlex_2	Neuroscience Information Framework (NIF) Dysfunction Ontlogy	LOOM
http://ontology.neuinfo.org/NIF/Backend/BIRNLex-OBO-UBO.owl#birnlex_2	Neuroscience Information Framework (NIF) Cell Ontology	LOOM
http://purl.org/cpr/organism	Computer-Based Patient Record Ontology	LOOM
http://purl.org/cpr/organism	Sleep Domain Ontology	LOOM
https://code.ecoinformatics.org/code/semtools/trunk/dev/oboe/oboe-sbc.owl#Organism	Santa Barbara Coastal Observation Ontology	LOOM
http://chem.deri.ie/granatum#Organism	Cancer Chemoprevention Ontology	LOOM
http://www.mygrid.org.uk/ontology/JERMOntology#Organism	SysMO JERM Ontology of Systems Biology for Micro-Organisms	LOOM
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C14250	National Cancer Institute Thesaurus	LOOM
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C14250	National Cancer Institute Thesaurus	LOOM
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C14250	National Cancer Institute Thesaurus	LOOM
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C14250	National Cancer Institute Thesaurus	LOOM
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C14250	National Cancer Institute Thesaurus	LOOM
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C14250	National Cancer Institute Thesaurus	LOOM
http://purl.obolibrary.org/obo/HaauraA_0000795	Halocynthia aurantium Anatomy and Development Ontology	LOOM
http://purl.obolibrary.org/obo/CisaviA_0000795	Ciona savignyi Anatomy and Development Ontology	LOOM
http://purl.bioontology.org/ontology/RCD/X79o9	Read Codes, Clinical Terms Version 3 (CTV3)	LOOM
http://purl.obolibrary.org/obo/TrOn_0000024	Tribolium Ontology	LOOM
http://brd.bsvgateway.org/api/organism/	Anthology of Biosurveillance Diseases	LOOM
http://obi.sourceforge.net/ontology/OBI.owl#OBI_251	NMR-Instrument Component of Metabolomics Investigations Ontology	LOOM
http://purl.obolibrary.org/obo/SIO_010000	Regulation of Transcription Ontology	LOOM
http://purl.obolibrary.org/obo/BSA_0000038	Botryllus schlosseri anatomy and development ontology	LOOM
http://purl.obolibrary.org/obo/CARO_0000012	FlyBase Controlled Vocabulary	LOOM
http://purl.obolibrary.org/obo/CARO_0000012	FlyBase Controlled Vocabulary	LOOM
http://purl.bioontology.org/ontology/SNOMEDCT/410607006	SNOMED CT	LOOM
http://doe-generated-ontology.com/OntoAD#Organism	Bilingual Ontology of Alzheimer's Disease and Related Diseases	LOOM
http://www.bioassayontology.org/bao#BAO_0000551	BioAssay Ontology	LOOM
http://www.owl-ontologies.com/Ontology1358660052.owl#Organism	Pediatric Terminology	LOOM
http://rdf.biosemantics.org/ontologies/genomecomponents#Organism	Genome Component Ontology	LOOM
http://purl.dataone.org/odo/ECSO_00000312	The Ecosystem Ontology	LOOM
http://purl.dataone.org/odo/ECSO_00000312	The Ecosystem Ontology	LOOM
http://www.fao.org/aims/aos/cwr.owl#Organism	Cerrado concepts and plant community dynamics	LOOM
http://purl.obolibrary.org/obo/ODGI.owl#Organism	Ontology for Genetic Disease Investigations	LOOM
http://www.semanticweb.org/ontologies/2010/5/22/Ontology1277229984000.owl#HPI:0000001	Host Pathogen Interactions Ontology	LOOM
http://purl.obolibrary.org/obo/MoocciA_0000795	Molgula occidentalis Anatomy and Development Ontology	LOOM
http://www.semanticweb.org/jdr2160/ontologies/2015/5/venom_ontology#Organism	Venom Ontology	LOOM
http://www.semanticweb.org/shoshana/ontologies/2014/8/untitled-ontology-8#Organism	Enzyme Structure Function Ontology	LOOM
http://purl.org/stemnet/MHC#Organism	Major Histocompatibility Complex Ontology	LOOM
http://www.ifomis.org/acgt/1.0#Organism	Cancer Research and Management ACGT Master Ontology	LOOM
http://purl.obolibrary.org/obo/HaroreA_0000795	Halocynthia roretzi Anatomy and Development Ontology	LOOM
http://www.cea.fr/ontotoxnuc#Organisme	Ontology of Nuclear Toxicity	LOOM
http://sweet.jpl.nasa.gov/2.3/matrBiomass.owl#Organism	Material	LOOM
http://sweet.jpl.nasa.gov/2.3/matrBiomass.owl#Organism	Semantic Web for Earth and Environment Technology Ontology	LOOM
http://sweet.jpl.nasa.gov/2.3/matrBiomass.owl#Organism	Material Organic Compound	LOOM
http://sweet.jpl.nasa.gov/2.3/matrBiomass.owl#Organism	Material Compound	LOOM
http://sweet.jpl.nasa.gov/2.3/matrBiomass.owl#Organism	Material Mineral	LOOM
http://sweet.jpl.nasa.gov/2.3/matrBiomass.owl#Organism	Material Rock	LOOM
http://sweet.jpl.nasa.gov/2.3/matrBiomass.owl#Organism	Chemical Process	LOOM
http://sweet.jpl.nasa.gov/2.3/matrBiomass.owl#Organism	Material Element	LOOM
http://sweet.jpl.nasa.gov/2.3/matrBiomass.owl#Organism	Material Rock Igneouus	LOOM
http://sweet.jpl.nasa.gov/2.3/matrBiomass.owl#Organism	Material Natural Resource	LOOM
http://purl.obolibrary.org/obo/ID_0000075	Bone and Cartilage Tissue Engineering Ontology	LOOM
http://purl.org/net/OCRe/OCRe.owl#OCRE400064	Ontology of Clinical Research	LOOM
http://purl.obolibrary.org/obo/PhmammA_0000795	Phallusia mammillata Anatomy and Development Ontology	LOOM
http://purl.bioontology.org/ontology/CSP/4000-0232	Computer Retrieval of Information on Scientific Projects Thesaurus	LOOM
http://purl.obolibrary.org/obo/MooccuA_0000795	Molgula occulta Anatomy and Development Ontology	LOOM
http://purl.obolibrary.org/obo/WBbt_0007833	C. elegans Gross Anatomy Vocabulary	LOOM
http://www.bootstrep.eu/ontology/GRO#Organism	Gene Regulation Ontology	LOOM
http://www.bootstrep.eu/ontology/GRO#Organism	Sage Bionetworks Synapse Ontology	LOOM
http://purl.dataone.org/odo/ECSO_00002446	The Ecosystem Ontology	LOOM
http://purl.obolibrary.org/obo/CARO_0010004	Population and Community Ontology	LOOM
http://purl.obolibrary.org/obo/CARO_0010004	Biological Collections Ontology	LOOM
http://lsdis.cs.uga.edu/projects/glycomics/propreo#organism	Proteomics Data and Process Provenance Ontology	LOOM
http://purl.obolibrary.org/obo/FBbt_00000001	FlyBase Controlled Vocabulary	LOOM
http://purl.obolibrary.org/obo/FBbt_00000001	Drosophila Gross Anatomy Ontology	LOOM
http://purl.obolibrary.org/obo/FBbt_00000001	FlyBase Controlled Vocabulary	LOOM
http://purl.obolibrary.org/obo/OMIT_0000052	Ontology for MicroRNA Target	LOOM
http://www.loria.fr/~coulet/ontology/snpontology/version1.6/snpontology_full.owl#organism	Single-Nucleotide Polymorphism (SNP) Ontology	LOOM
http://purl.bioontology.org/ontology/STY/T001	Read Codes, Clinical Terms Version 3 (CTV3)	LOOM
http://purl.bioontology.org/ontology/STY/T001	Computer Retrieval of Information on Scientific Projects Thesaurus	LOOM
http://purl.bioontology.org/ontology/STY/T001	Medical Subject Headings	LOOM
http://purl.bioontology.org/ontology/STY/T001	Logical Observation Identifier Names and Codes	LOOM
http://purl.bioontology.org/ontology/STY/T001	International Classification of Diseases, Version 10 - Procedure Coding System	LOOM
http://purl.bioontology.org/ontology/STY/T001	International Classification of Primary Care - 2 PLUS	LOOM
http://purl.bioontology.org/ontology/STY/T001	Online Mendelian Inheritance in Man	LOOM
http://purl.bioontology.org/ontology/STY/T001	International Classification of Diseases, Version 10	LOOM
http://purl.bioontology.org/ontology/STY/T001	Veterans Health Administration National Drug File	LOOM
http://purl.bioontology.org/ontology/STY/T001	Systematized Nomenclature of Medicine, International Version	LOOM
http://purl.bioontology.org/ontology/STY/T001	Current Procedural Terminology	LOOM
http://purl.bioontology.org/ontology/STY/T001	Master Drug Data Base Clinical Drugs	LOOM
http://purl.bioontology.org/ontology/STY/T001	Medical Dictionary for Regulatory Activities	LOOM
http://purl.bioontology.org/ontology/STY/T001	World Health Organization (WHO) Adverse Reaction Terminology	LOOM
http://purl.bioontology.org/ontology/STY/T001	Coding Symbols for a Thesaurus of Adverse Reaction Terms	LOOM
http://purl.bioontology.org/ontology/STY/T001	National Drug Data File	LOOM
http://purl.bioontology.org/ontology/STY/T001	Healthcare Common Procedure Coding System	LOOM
http://purl.bioontology.org/ontology/STY/T001	Minimal Standard Terminology of Digestive Endoscopy	LOOM
http://purl.bioontology.org/ontology/STY/T001	Physician Data Query	LOOM
http://purl.bioontology.org/ontology/STY/T001	International Classification of Primary Care	LOOM
http://purl.bioontology.org/ontology/STY/T001	MedlinePlus Health Topics	LOOM
http://purl.bioontology.org/ontology/STY/T001	National Drug File - Reference Terminology	LOOM
http://purl.bioontology.org/ontology/STY/T001	Health Level Seven Reference Implementation Model, Version 3	LOOM
http://purl.bioontology.org/ontology/STY/T001	International Classification of Diseases, Version 9 - Clinical Modification	LOOM
http://purl.bioontology.org/ontology/STY/T001	National Center for Biotechnology Information (NCBI) Organismal Classification	LOOM
http://purl.bioontology.org/ontology/STY/T001	Artificial Intelligence Rheumatology Consultant System Ontology	LOOM
http://purl.bioontology.org/ontology/STY/T001	SNOMED CT	LOOM
http://purl.bioontology.org/ontology/STY/T001	Radiation Oncology Ontology	LOOM
http://purl.bioontology.org/ontology/STY/T001	RxNORM	LOOM
http://purl.bioontology.org/ontology/STY/T001	International Classification of Diseases, Version 10 - Clinical Modification	LOOM
http://purl.bioontology.org/ontology/STY/T001	Minimal Standard Terminology of Digestive Endoscopy, French	LOOM
http://purl.bioontology.org/ontology/STY/T001	Anatomical Therapeutic Chemical Classification	LOOM
http://purl.bioontology.org/ontology/STY/T001	Semantic Types Ontology	LOOM
http://www.w3.org/2001/sw/hcls/ns/transmed/TMO_0144	Translational Medicine Ontology	LOOM
http://bioontology.org/projects/ontologies/birnlex#birnlex_2	Biomedical Informatics Research Network Project Lexicon	LOOM
http://www.projecthalo.com/aura#Organism	KB_Bio_101	LOOM
http://rs.tdwg.org/dwc/terms/Organism	Biological Collections Ontology	LOOM
http://purl.obolibrary.org/obo/MooculA_0000795	Molgula oculata Anatomy and Development Ontology	LOOM
http://purl.obolibrary.org/obo/PhfumiA_0000795	Phallusia fumigata Anatomy and Development Ontology	LOOM
http://www.co-ode.org/ontologies/galen#Organism	Galen Ontology	LOOM
http://ecoinformatics.org/oboe/oboe.1.0/oboe-biology.owl#Organism	Santa Barbara Coastal Observation Ontology	LOOM
http://semanticscience.org/resource/Organism	Children's Health Exposure Analysis Resource	LOOM
http://mged.sourceforge.net/ontologies/MGEDOntology.owl#Organism	Microarray and Gene Expression Data Ontology	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Ontology of Genes and Genomes	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Ontology of Drug Neuropathy Adverse Events	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Influenza Ontology	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Bioinformatics Web Service Ontology	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	SMART Protocols	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	VIVO-Integrated Semantic Framework	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	go-plus	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Vaccine Ontology	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Beta Cell Genomics Ontology	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Human Physiology Simulation Ontology	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Ontology of Host-Microbe Interactions	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Vaccine Ontology	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Vaccine Ontology	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Ontology of Chinese Medicine for Rheumatism	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	AdaLab ontology	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Brucellosis Ontology	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Protein Ontology	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Experimental Factor Ontology	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	go-plus	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Vaccine Ontology	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Ontology of Chinese Medicine for Rheumatism	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Non-coding RNA Ontology	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	go-plus	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Ontology of Genes and Genomes - Mouse	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Vaccine Ontology	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Protein Ontology	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Cell Culture Ontology	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Vaccine Ontology	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Clusters of Orthologous Groups (COG) Analysis Ontology	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Informed Consent Ontology	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	GenEpiO	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Ontology of Adverse Events	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Ontology of Adverse Events	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Ontology of Medically Related Social Entities	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Infectious Disease Ontology	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Interaction Network Ontology	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Ontology for Biomedical Investigations	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Apollo Structured Vocabulary	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	SMART Protocols	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	FoodOn	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Ontology of Medically Related Social Entities	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Ontology of Adverse Events	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	go-plus	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Vaccine Ontology	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Ontology for Parasite LifeCycle	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	The Potential Drug-drug Interaction and Potential Drug-drug Interaction Evidence Ontology	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	eNanoMapper	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Ontology for Biobanking	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	The Drug Ontology	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Vaccine Ontology	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Vaccine Ontology	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Vaccination Informed Consent Ontology	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	go-plus	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Ontology for Biomedical Investigations	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Eagle-I Research Resource Ontology	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	go-plus	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Human Interaction Network Ontology	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Dengue Fever Ontology	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Apollo Structured Vocabulary	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Epigenome Ontology	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Ontology of Biological and Clinical Statistics	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Vaccine Ontology	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Ontology of Adverse Events	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Obstetric and Neonatal Ontology	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Cell Line Ontology	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Ontology for Biobanking	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	go-plus	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Microbial Typing Ontology	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	go-plus	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	MicroRNA Ontology	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Ontology of Medically Related Social Entities	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Ontology of Vaccine Adverse Events	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Ontology of Chinese Medicine for Rheumatism	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Statistics Ontology	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	SMART Protocols	LOOM
http://purl.obolibrary.org/obo/OBI_0100026	Vaccine Ontology	LOOM

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