Neomark Oral Cancer Ontology, version 4

Last uploaded: November 11, 2011
Preferred Name

anatomical entity

Definitions

An anatomical entity is a material entity that is part of a multicellular organism, and which is large enough so that it forms an identifiable structure in the organism. Specifically, it excludes granular parts of the organism, such as atoms, molecules, cells, which can be removed from the organism without affecting it. It is defined as the union of 'multi-tissue structure', 'body substance' and 'portion of tissue'

ID

http://purl.obolibrary.org/obo/OBI_0100015

CN_pl

OBI_0100015s

CN_sg

OBI_0100015

definition

An anatomical entity is a material entity that is part of a multicellular organism, and which is large enough so that it forms an identifiable structure in the organism. Specifically, it excludes granular parts of the organism, such as atoms, molecules, cells, which can be removed from the organism without affecting it. It is defined as the union of 'multi-tissue structure', 'body substance' and 'portion of tissue'

definition editor

Bjoern Peters

Tina Boussard

Philippe Rocca-Serra

definition source

MO

editor note

not super happy about liquids (blood, sperm), as they seem to be 'granular' somewhat, and not form a structure.

10/20/09: This class and all subclasses are currently problematic. They should all be imported from other OBO foundry ontologies. (FMA / CARO / UBERON). Currently two problems exist: There is no cross species anatomy that covers all the entities we need. Secondly: there is not good boundary between anatomical entities and smaller parts in FMA. Currently we will use anatomical entities as if they are valid across species.

editor preferred term

anatomical entity

example of usage

Tissue, organ, system, sperm, blood or body location (arm).

has curation status

http://purl.obolibrary.org/obo/IAO_0000121

imported from

http://purl.obolibrary.org/obo/obi.owl

label

anatomical entity

prefLabel

anatomical entity

subClassOf

http://www.ifomis.org/bfo/1.1/snap#MaterialEntity

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http://purl.obolibrary.org/obo/MooculA_0000791 Molgula oculata Anatomy and Development Ontology LOOM
http://www.bioassayontology.org/bao#BAO_0002930 BioAssay Ontology LOOM
http://sig.biostr.washington.edu/fma3.0#AnatomicalEntity Breast Tissue Cell Lines Ontology LOOM
http://scai.fraunhofer.de/NDDUO#Anatomical Alzheimer's disease ontology LOOM
http://scai.fraunhofer.de/NDDUO#Anatomical Pre-eclampsia Ontology LOOM
http://purl.obolibrary.org/obo/TrOn_0000001 Tribolium Ontology LOOM
http://purl.obolibrary.org/obo/FMA_62955 The Oral Health and Disease Ontology LOOM
http://purl.obolibrary.org/obo/FMA_62955 Ontology for MicroRNA Target LOOM
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http://purl.obolibrary.org/obo/UBERON_0001062 Ontology of Adverse Events LOOM
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http://purl.obolibrary.org/obo/UBERON_0001062 Uber Anatomy Ontology LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 Cell Line Ontology LOOM
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http://purl.obolibrary.org/obo/UBERON_0001062 Combined Phenotype Ontology LOOM
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http://purl.obolibrary.org/obo/UBERON_0001062 Neuroscience Information Framework (NIF) Standard Ontology LOOM
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http://purl.obolibrary.org/obo/UBERON_0001062 Ontology of Biological Attributes LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 Environment Ontology LOOM
http://purl.obolibrary.org/obo/UBERON_0001062 Ontology of Vaccine Adverse Events LOOM
http://purl.org/sig/fma/Anatomical_entity Ontology for Newborn Screening Follow-up and Translational Research LOOM
http://webprotege.stanford.edu/project/C5jwy47uikteCsueDXkxtB#anatomical_entity Collembola Anatomy Ontology LOOM
http://purl.obolibrary.org/obo/CiinteA_0000791 Ciona intestinalis Anatomy and Development Ontology LOOM
http://purl.obolibrary.org/obo/HAO_0000000 Hymenoptera Anatomy Ontology LOOM
http://www.semanticweb.org/ontologies/2010/5/22/Ontology1277229984000.owl#HPI:0000075 Host Pathogen Interactions Ontology LOOM
http://purl.obolibrary.org/obo/CisaviA_0000791 Ciona savignyi Anatomy and Development Ontology LOOM
http://www.owl-ontologies.com/Ontology1239104585.owl#AnatomicalEntity Breast Cancer Grading Ontology LOOM
http://purl.bioontology.org/NEMO/ontology/NEMO.owl#NEMO_1111111 Neural ElectroMagnetic Ontology LOOM
http://purl.obolibrary.org/obo/HaauraA_0000791 Halocynthia aurantium Anatomy and Development Ontology LOOM
http://www.radlex.org/RID/#RID3 Radiology Lexicon LOOM
http://purl.org/obo/owl/FMA#FMA_62955 Sleep Domain Ontology LOOM
http://purl.obolibrary.org/obo/TADS_0000583 Tick Gross Anatomy Ontology LOOM
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http://purl.obolibrary.org/obo/SPD_0000000 Spider Ontology LOOM
http://purl.obolibrary.org/obo/FBbt_10000000 Drosophila Gross Anatomy Ontology LOOM
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http://purl.obolibrary.org/obo/OARCS_0000226 Ontology of Arthropod Circulatory Systems LOOM
http://purl.obolibrary.org/obo/MoocciA_0000791 Molgula occidentalis Anatomy and Development Ontology LOOM
http://purl.obolibrary.org/obo/HaroreA_0000791 Halocynthia roretzi Anatomy and Development Ontology LOOM
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http://bioontology.org/projects/ontologies/birnlex#birnlex_1002 Biomedical Informatics Research Network Project Lexicon LOOM
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http://purl.obolibrary.org/obo/CARO_0000000 Brucellosis Ontology LOOM
http://purl.obolibrary.org/obo/CARO_0000000 Ctenophore Ontology LOOM
http://purl.obolibrary.org/obo/CARO_0000000 Teleost Anatomy Ontology LOOM
http://purl.obolibrary.org/obo/CARO_0000000 Spatial Ontology LOOM
http://purl.obolibrary.org/obo/CARO_0000000 go-plus LOOM
http://purl.obolibrary.org/obo/CARO_0000000 Infectious Disease Ontology LOOM
http://purl.obolibrary.org/obo/CARO_0000000 go-plus LOOM
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http://purl.obolibrary.org/obo/CARO_0000000 go-plus LOOM
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http://purl.obolibrary.org/obo/CARO_0000000 Vertebrate Skeletal Anatomy Ontology LOOM
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http://purl.obolibrary.org/obo/CARO_0000000 Human Developmental Anatomy Ontology, abstract version 2 LOOM
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http://purl.obolibrary.org/obo/PhfumiA_0000791 Phallusia fumigata Anatomy and Development Ontology LOOM
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http://purl.obolibrary.org/obo/OBI_0100015 Adverse Event Reporting Ontology SAME_URI
http://purl.obolibrary.org/obo/OBI_0100015 Ontology for Biomedical Investigations SAME_URI
http://purl.obolibrary.org/obo/OBI_0100015 Epigenome Ontology SAME_URI
http://www.semanticweb.org/pallabi.d/ontologies/2014/2/untitled-ontology-11#AnatomicalEntity Cell Line Ontology [by Mahadevan] LOOM