Molecular Interaction Map

Last uploaded: October 30, 2014
Preferred Name

SmallMolecule

Definitions

Definition: A pool of molecules that are neither complexes nor are genetically encoded. Rationale: Identity of small molecules are based on structure, rather than sequence as in the case of DNA, RNA or Protein. A small molecule reference is a grouping of several small molecule entities that have the same chemical structure. Usage : Smalle Molecules can have a cellular location and binding features. They can't have modification features as covalent modifications of small molecules are not considered as state changes but treated as different molecules. Some non-genomic macromolecules, such as large complex carbohydrates are currently covered by small molecules despite they lack a static structure. Better coverage for such molecules require representation of generic stoichiometry and polymerization, currently planned for BioPAX level 4. Examples: glucose, penicillin, phosphatidylinositol

ID

http://www.biopax.org/release/biopax-level3.owl#SmallMolecule

comment

Definition: A pool of molecules that are neither complexes nor are genetically encoded. Rationale: Identity of small molecules are based on structure, rather than sequence as in the case of DNA, RNA or Protein. A small molecule reference is a grouping of several small molecule entities that have the same chemical structure. Usage : Smalle Molecules can have a cellular location and binding features. They can't have modification features as covalent modifications of small molecules are not considered as state changes but treated as different molecules. Some non-genomic macromolecules, such as large complex carbohydrates are currently covered by small molecules despite they lack a static structure. Better coverage for such molecules require representation of generic stoichiometry and polymerization, currently planned for BioPAX level 4. Examples: glucose, penicillin, phosphatidylinositol

prefixIRI

SmallMolecule

prefLabel

SmallMolecule

subClassOf

http://www.biopax.org/release/biopax-level3.owl#PhysicalEntity

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http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C48809 NCIT LOOM
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C48809 NCIT LOOM
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C48809 NCIT LOOM
http://www.biopax.org/release/biopax-level3.owl#SmallMolecule BP LOOM
http://www.biopax.org/release/biopax-level3.owl#SmallMolecule BP SAME_URI
http://www.biopax.org/release/biopax-level3.owl#SmallMolecule CHEMBIO LOOM
http://www.biopax.org/release/biopax-level3.owl#SmallMolecule CHEMBIO SAME_URI
http://www.biopax.org/release/biopax-level3.owl#SmallMolecule DIKB LOOM
http://www.biopax.org/release/biopax-level3.owl#SmallMolecule DIKB SAME_URI
http://purl.obolibrary.org/obo/MI_0328 MI LOOM
http://purl.obolibrary.org/obo/MI_0328 MI LOOM
http://purl.obolibrary.org/obo/MI_0328 MI LOOM
http://purl.obolibrary.org/obo/MI_0328 MI LOOM
http://purl.obolibrary.org/obo/MI_0328 MI LOOM
http://regenbase.org/ontology#RB_0000125 RB LOOM
http://purl.bioontology.org/ontology/CSP/5004-0075 CRISP LOOM
http://lsdis.cs.uga.edu/projects/glycomics/propreo#small_molecule PROPREO LOOM
http://purl.jp/bio/4/id/200906048748154930 IOBC LOOM
http://purl.obolibrary.org/obo/VariO_0263 VARIO LOOM
http://www.semanticweb.org/BiPON/BiPON_00000040 BIPON LOOM
http://bioontology.org/ontologies/Activity.owl#Small_Molecule BRO_ACRONYM LOOM
http://bioontology.org/ontologies/Activity.owl#Small_Molecule BRO LOOM
http://hadatac.org/ont/chear#SmallMolecule CHEAR LOOM
http://purl.obolibrary.org/obo/INO_0000132 ADALAB LOOM
http://purl.obolibrary.org/obo/INO_0000132 INO LOOM
http://purl.obolibrary.org/obo/INO_0000132 HINO LOOM
http://www.bioassayontology.org/bao#BAO_0000176 BAO LOOM
http://www.bioassayontology.org/bao#BAO_0000176 BAO LOOM