Experimental Factor Ontology

Last uploaded: March 18, 2024
Preferred Name

midbrain

Synonyms

MB

mesencephalon

Definitions

The midbrain is the middle division of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes a ventral part containing the cerebral peduncles and a dorsal tectum containing the corpora quadrigemina and that surrounds the aqueduct of Sylvius connecting the third and fourth ventricles)[GO].

ID

http://purl.obolibrary.org/obo/UBERON_0001891

database_cross_reference

TAO:0000128

ZFA:0000128

NCIT:C12510

EHDAA2:0001162

AAO:0010149

MIAA:0000106

MAT:0000106

Wikipedia:Midbrain

EFO:0000919

SCTID:279099009

BIRNLEX:1667

VHOG:0000069

CALOHA:TS-0630

RETIRED_EHDAA2:0001104

UMLS:C0025462

BTO:0000138

XAO:0000014

EMAPA:16974

neuronames:462

MESH:D008636

BAMS:MES

BM:MB

DHBA:10648

DMBA:16649

EHDAA:3694

EV:0100242

FMA:61993

HBA:9001

MA:0000207

MBA:313

definition

The midbrain is the middle division of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes a ventral part containing the cerebral peduncles and a dorsal tectum containing the corpora quadrigemina and that surrounds the aqueduct of Sylvius connecting the third and fourth ventricles)[GO].

depiction

http://upload.wikimedia.org/wikipedia/commons/f/f9/Human_brain_inferior_view_description.JPG

editor note

developmental relationships need revised

external_definition

Middle part of the brain composed of the optic tectum and penducular region.[AAO]

The brain region between the forebrain anteriorly and the hindbrain posteriorly, including the tectum dorsally and the midbrain tegmentum ventrally. Kimmel et al, 1995.[TAO]

external_ontology_notes

part of brainstem in ABA - we reject this in favor of ISBN:0471888893 which has an implicit overlaps relationships

has_broad_synonym

MB

has_obo_namespace

uberon

has_related_synonym

mesencephalon

has_relational_adjective

mesencephalic

homology_notes

Fine structural, computerized three-dimensional (3D) mapping of cell connectivity in the amphioxus nervous system and comparative molecular genetic studies of amphioxus and tunicates have provided recent insights into the phylogenetic origin of the vertebrate nervous system. The results suggest that several of the genetic mechanisms for establishing and patterning the vertebrate nervous system already operated in the ancestral chordate and that the nerve cord of the proximate invertebrate ancestor of the vertebrates included a diencephalon, midbrain, hindbrain, and spinal cord.[well established][VHOG]

id

UBERON:0001891

in_subset

http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas

http://purl.obolibrary.org/obo/uberon/core#efo_slim

http://purl.obolibrary.org/obo/uberon/core#vertebrate_core

http://purl.obolibrary.org/obo/uberon/core#pheno_slim

http://purl.obolibrary.org/obo/uberon/core#uberon_slim

label

midbrain

notation

UBERON:0001891

part_of

http://purl.obolibrary.org/obo/UBERON_0001016

http://purl.obolibrary.org/obo/UBERON_0000955

prefLabel

midbrain

RO_0002171

http://purl.obolibrary.org/obo/UBERON_0002028

http://purl.obolibrary.org/obo/UBERON_0001894

RO_0002175

http://purl.obolibrary.org/obo/NCBITaxon_9606

treeView

http://purl.obolibrary.org/obo/UBERON_0001016

http://purl.obolibrary.org/obo/UBERON_0000955

subClassOf

http://purl.obolibrary.org/obo/UBERON_0000061

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Delete Mapping To Ontology Source
http://purl.obolibrary.org/obo/UBERON_0001891 PATO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001891 UBERON SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001891 OBA SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001891 NPOKB SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001891 CL SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001891 OAE SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001891 RBO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001891 CLO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001891 OVAE SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001891 OHPI SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001891 FOVT SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001891 OCMR SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001891 OBI_BCGO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001891 XPO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001891 PCL SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001891 PATO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001891 NIFDYS SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001891 EPIO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001891 BERO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001891 NBO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001891 HHEAR SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001891 OBA SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001891 ODAE SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001891 UPHENO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001891 OCVDAE SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001891 NIFSTD SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001891 KTAO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001891 MAXO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001891 CCF SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001891 GO-PLUS SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001891 FNS-H SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001891 AISM SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001891 NMDCO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0001891 PATO LOOM
http://purl.obolibrary.org/obo/UBERON_0001891 UBERON LOOM
http://purl.obolibrary.org/obo/UBERON_0001891 OBA LOOM
http://purl.org/obo/owlapi/fma#FMA_61993 BIOMODELS LOOM
http://www.semanticweb.org/ontologies/2009/3/ontoDPN.owl#Mesencephale_F EPO LOOM
http://purl.obolibrary.org/obo/VHOG_0000069 VHOG LOOM
http://purl.obolibrary.org/obo/EHDA_5552 EHDA LOOM
http://www.semanticweb.org/rjyy/ontologies/2015/5/ESSO#Midbrain ESSO LOOM
http://www.semanticweb.org/rjyy/ontologies/2015/5/ESSO#Midbrain MEPO LOOM
http://www.projecthalo.com/aura#Midbrain AURA LOOM
http://www.semanticweb.org/ontologies/2009/9/Ontology1255357986125.owl#Midbrain BRCT LOOM
http://bioontology.org/projects/ontologies/birnlex#birnlex_1667 BIRNLEX LOOM
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http://purl.obolibrary.org/obo/UBERON_0001891 CL LOOM
http://purl.obolibrary.org/obo/UBERON_0001891 OAE LOOM
http://purl.obolibrary.org/obo/UBERON_0001891 RBO LOOM
http://purl.obolibrary.org/obo/UBERON_0001891 CLO LOOM
http://purl.obolibrary.org/obo/UBERON_0001891 OVAE LOOM
http://purl.obolibrary.org/obo/UBERON_0001891 OHPI LOOM
http://purl.obolibrary.org/obo/UBERON_0001891 FOVT LOOM
http://purl.obolibrary.org/obo/UBERON_0001891 OCMR LOOM
http://purl.obolibrary.org/obo/UBERON_0001891 OBI_BCGO LOOM
http://purl.obolibrary.org/obo/UBERON_0001891 XPO LOOM
http://purl.obolibrary.org/obo/UBERON_0001891 PCL LOOM
http://purl.obolibrary.org/obo/UBERON_0001891 PATO LOOM
http://purl.obolibrary.org/obo/UBERON_0001891 NIFDYS LOOM
http://purl.obolibrary.org/obo/UBERON_0001891 EPIO LOOM
http://purl.obolibrary.org/obo/UBERON_0001891 NBO LOOM
http://purl.obolibrary.org/obo/UBERON_0001891 HHEAR LOOM
http://purl.obolibrary.org/obo/UBERON_0001891 OBA LOOM
http://purl.obolibrary.org/obo/UBERON_0001891 ODAE LOOM
http://purl.obolibrary.org/obo/UBERON_0001891 UPHENO LOOM
http://purl.obolibrary.org/obo/UBERON_0001891 OCVDAE LOOM
http://purl.obolibrary.org/obo/UBERON_0001891 NIFSTD LOOM
http://purl.obolibrary.org/obo/UBERON_0001891 KTAO LOOM
http://purl.obolibrary.org/obo/UBERON_0001891 MAXO LOOM
http://purl.obolibrary.org/obo/UBERON_0001891 GO-PLUS LOOM
http://purl.obolibrary.org/obo/UBERON_0001891 FNS-H LOOM
http://purl.obolibrary.org/obo/UBERON_0001891 AISM LOOM
http://purl.obolibrary.org/obo/UBERON_0001891 NMDCO LOOM
http://mouse.brain-map.org/atlas/index.html#MB ABA-AMB LOOM
http://purl.obolibrary.org/obo/EHDA_8853 EHDA LOOM
http://purl.obolibrary.org/obo/EHDAA2_0001162 EHDAA2 LOOM
http://radlex.org/RID/RID6768 RADLEX LOOM
http://purl.obolibrary.org/obo/MAT_0000106 MAT LOOM
http://api.brain-map.org/api/v2/data/Structure/313 NPOKB LOOM
http://api.brain-map.org/api/v2/data/Structure/313 NIFSTD LOOM
http://purl.obolibrary.org/obo/MFO_0002420 MFO LOOM
http://www.semanticweb.org/ontologies/STO.owl#c3e14c12_c4f5_43c6_b8ff_244d5661fd6c STO-DRAFT LOOM
http://www.semanticweb.org/ontologies/STO.owl#c3e14c12_c4f5_43c6_b8ff_244d5661fd6c CVAO LOOM
http://purl.obolibrary.org/obo/EHDA_10026 EHDA LOOM
http://purl.obolibrary.org/obo/MA_0000207 MA LOOM
http://purl.obolibrary.org/obo/EMAPA_16974 EMAPA LOOM
http://purl.obolibrary.org/obo/XAO_0000014 XPO LOOM
http://purl.obolibrary.org/obo/XAO_0000014 UPHENO LOOM
http://purl.obolibrary.org/obo/XAO_0000014 XAO LOOM
http://uri.neuinfo.org/nif/nifstd/birnlex_1667 NIFSTD LOOM
http://purl.obolibrary.org/obo/EHDA_6631 EHDA LOOM
http://purl.obolibrary.org/obo/EHDA_7639 EHDA LOOM
http://www.ustb.edu.cn/thesauri/tocr/v1/data#C571346494750191654 ACVD_ONTOLOGY LOOM
http://scai.fraunhofer.de/MSOntology#Midbrain MSO LOOM
http://purl.obolibrary.org/obo/EHDA_4593 EHDA LOOM
http://localhost/plosthes.2017-1#5463 PLOSTHES LOOM
http://purl.obolibrary.org/obo/ZFA_0000128 ZFA LOOM
http://purl.obolibrary.org/obo/ZFA_0000128 UPHENO LOOM
http://purl.obolibrary.org/obo/ZFA_0000128 ZP LOOM
http://sbmi.uth.tmc.edu/ontology/ochv#C0025462 OCHV LOOM
http://purl.obolibrary.org/obo/TAO_0000128 TAO LOOM
http://purl.obolibrary.org/obo/FMA_61993 NIO LOOM
http://purl.obolibrary.org/obo/BTO_0000138 BTO LOOM
http://purl.obolibrary.org/obo/EHDA_3695 EHDA LOOM
http://purl.obolibrary.org/obo/EHDAA_3694 EHDAA LOOM
http://purl.org/sig/ont/fma/fma61993 FMA LOOM
http://purl.org/obo/owl/FMA#FMA_61993 SDO LOOM
http://purl.bioontology.org/ontology/RCD/Xa0yt RCD LOOM