Preferred Name

Protein feature detection

Synonyms

Protein site recognition

Sequence profile database search

Protein site detection

Protein feature recognition

Protein site prediction

Sequence feature detection (protein)

Protein feature prediction

Protein secondary database search

Definitions

Predict, recognise and identify positional features in proteins from analysing protein sequences or structures. Features includes functional sites or regions, secondary structure, structural domains and so on. Methods might use fingerprints, motifs, profiles, hidden Markov models, sequence alignment etc to provide a mapping of a query protein sequence to a discriminatory element. This includes methods that search a secondary protein database (Prosite, Blocks, ProDom, Prints, Pfam etc.) to assign a protein sequence(s) to a known protein family or group.

ID

http://edamontology.org/operation_3092

comment

Features includes functional sites or regions, secondary structure, structural domains and so on. Methods might use fingerprints, motifs, profiles, hidden Markov models, sequence alignment etc to provide a mapping of a query protein sequence to a discriminatory element. This includes methods that search a secondary protein database (Prosite, Blocks, ProDom, Prints, Pfam etc.) to assign a protein sequence(s) to a known protein family or group.

Created in

beta13

hasDefinition

Predict, recognise and identify positional features in proteins from analysing protein sequences or structures.

hasExactSynonym

Protein feature recognition

Protein feature prediction

hasNarrowSynonym

Protein site recognition

Sequence profile database search

Protein site detection

Protein site prediction

Sequence feature detection (protein)

Protein secondary database search

inSubset

http://purl.obolibrary.org/obo/edam#edam

http://purl.obolibrary.org/obo/edam#operations

label

Protein feature detection

prefixIRI

operation_3092

prefLabel

Protein feature detection

subClassOf

http://edamontology.org/operation_2423

http://edamontology.org/operation_2479

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http://edamontology.org/operation_3092 SWO LOOM
http://edamontology.org/operation_3092 SWO SAME_URI
http://edamontology.org/topic_3074 SWO LOOM