Preferred Name

SAM

Definitions

The format supports short and long reads (up to 128Mbp) produced by different sequencing platforms and is used to hold mapped data within the GATK and across the Broad Institute, the Sanger Centre, and throughout the 1000 Genomes project. Sequence Alignment/Map (SAM) format for alignment of nucleotide sequences (e.g. sequencing reads) to (a) reference sequence(s). May contain base-call and alignment qualities and other data.

ID

http://edamontology.org/format_2573

comment

The format supports short and long reads (up to 128Mbp) produced by different sequencing platforms and is used to hold mapped data within the GATK and across the Broad Institute, the Sanger Centre, and throughout the 1000 Genomes project.

Created in

beta12orEarlier

Documentation

https://samtools.github.io/hts-specs/SAMv1.pdf

hasDbXref

https://samtools.github.io/hts-specs/SAMv1.pdf

hasDefinition

Sequence Alignment/Map (SAM) format for alignment of nucleotide sequences (e.g. sequencing reads) to (a) reference sequence(s). May contain base-call and alignment qualities and other data.

inSubset

http://purl.obolibrary.org/obo/edam#edam

http://purl.obolibrary.org/obo/edam#formats

label

SAM

prefixIRI

format_2573

prefLabel

SAM

subClassOf

http://edamontology.org/format_2920

http://edamontology.org/format_2057

http://edamontology.org/format_2330

Delete Subject Author Type Created
No notes to display
Create New Mapping

Delete Mapping To Ontology Source
http://edamontology.org/format_2573 Eagle-I Research Resource Ontology LOOM
http://edamontology.org/format_2573 Eagle-I Research Resource Ontology SAME_URI
http://edamontology.org/format_2573 Software Ontology LOOM
http://edamontology.org/format_2573 Software Ontology SAME_URI
http://www.semanticweb.org/ADMO#SAM Alzheimer Disease Map Ontology LOOM
http://www.ebi.ac.uk/efo/swo/SWO_0000374 Eagle-I Research Resource Ontology LOOM
http://www.ebi.ac.uk/efo/swo/SWO_0000374 Software Ontology LOOM