Preferred Name

BioXSD (XML)

Synonyms

BioXSD XML format

BioXSD+XML

BioXSD|BioJSON|BioYAML

BioXSD|GTrack

BioXSD format

BioXSD in XML

BioXSD

BioXSD XML

BioXSD/GTrack

BioXSD data model

BioXSD in XML format

Definitions

BioXSD-schema-based XML format of sequence-based data and some other common data - sequence records, alignments, feature records, references to resources, and more - optimised for integrative bioinformatics, Web services, and object-oriented programming.

ID

http://edamontology.org/format_2352

comment

'BioXSD' belongs to the 'BioXSD|GTrack' ecosystem of generic formats. 'BioXSD in XML' is the XML format based on the common, unified 'BioXSD data model', a.k.a. 'BioXSD|BioJSON|BioYAML'.

Citation

http://doi.org/10.7490/f1000research.1113048.1

http://doi.org/10.1093/bioinformatics/btq391

http://doi.org/10.1186/1471-2105-12-494

Created in

beta12orEarlier

Documentation

http://bioxsd.org

http://bioxsd.org/BioXSD-1.1.xsd

Example

http://bioxsd.org/exampleFeatureRecords.html

http://bioxsd.org/accession.xml

http://bioxsd.org/sequenceRecord.xml

http://bioxsd.org/sequenceRecord.xml+json+yaml.xml

hasBroadSynonym

BioXSD|BioJSON|BioYAML

BioXSD|GTrack

BioXSD format

BioXSD

BioXSD/GTrack

BioXSD data model

hasDbXref

http://bioxsd.org

http://bioxsd.org/BioXSD-1.1.xsd

hasDefinition

BioXSD-schema-based XML format of sequence-based data and some other common data - sequence records, alignments, feature records, references to resources, and more - optimised for integrative bioinformatics, Web services, and object-oriented programming.

hasExactSynonym

BioXSD XML format

BioXSD+XML

BioXSD in XML

BioXSD XML

BioXSD in XML format

inSubset

http://purl.obolibrary.org/obo/edam#edam

http://purl.obolibrary.org/obo/edam#formats

label

BioXSD (XML)

Ontology used

Any ontology allowed, none mandatory. Preferrably with URIs but URIs are not mandatory. Non-ontology terms are also allowed as the last resort in case of a lack of suitable ontology.

prefixIRI

format_2352

prefLabel

BioXSD (XML)

Repository

https://github.com/bioxsd/bioxsd

subClassOf

http://edamontology.org/format_1919

http://edamontology.org/format_2332

http://edamontology.org/format_2555

http://edamontology.org/format_2571

http://edamontology.org/format_1920

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http://edamontology.org/format_2352 Software Ontology LOOM
http://edamontology.org/format_2352 Software Ontology SAME_URI