Evidence and Conclusion Ontology

Last uploaded: March 25, 2024
Preferred Name

match to sequence model evidence

Synonyms
Definitions

Used when evidence from any kind of statistical model of a sequence or group of sequences is used to make a prediction about the function of a protein or RNA. Examples of relevant evidence are: Hidden Markov Models, PROSITE motifs, and tools such as tRNASCAN. A type of sequence similarity evidence in which the function of a gene product is predicted based on a sequence-based statistical model.

ID

http://purl.obolibrary.org/obo/ECO_0000202

comment

Used when evidence from any kind of statistical model of a sequence or group of sequences is used to make a prediction about the function of a protein or RNA. Examples of relevant evidence are: Hidden Markov Models, PROSITE motifs, and tools such as tRNASCAN.

created_by

mchibucos

creation_date

2010-03-18T12:32:30Z

definition

A type of sequence similarity evidence in which the function of a gene product is predicted based on a sequence-based statistical model.

has_alternative_id

ECO:00000063

has_obo_namespace

eco

IAO_0000112

A putative rho-independent terminator sequence (GCCTGACTACATAGATGTCAGGC) was identified at position 402-bp downstream of SMU.1882 by TransTerm (transterm.dev.java.net) program.

id

ECO:0000202

label

match to sequence model evidence

notation

ECO:0000202

prefLabel

match to sequence model evidence

treeView

http://purl.obolibrary.org/obo/ECO_0000044

subClassOf

http://purl.obolibrary.org/obo/ECO_0000044

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