loading...| Number of classes: | 395036 |
|---|---|
| Number of individuals: | 0 |
| Number of properties: | 41 |
| Maximum depth: | 32 |
| Maximum number of siblings: | 20010 |
| Average number of siblings: | 1 |
| Classes with a single subclass: |
29002Classes with a single subclass10026001 |
| Classes with more than 25 subclasses: |
2053Classes with more than 25 subclasses91175000 (30) |
| Classes with no definition: | 394352 |
Details
| Ontology Id | 1353 |
|---|---|
| Acronym | SNOMEDCT |
| Visibility | Public |
| BioPortal PURL | http://purl.bioontology.org/ontology/SNOMEDCT |
| Status | |
| Format | UMLS |
| Categories |
Health
|
| Groups |
Unified Medical Language System
Cancer Biomedical Informatics Grid |
| Contact | Vivian A. Auld, auld@nlm.nih.gov |
| Home Page | http://ihtsdo.org |
| Publications Page | http://ihtsdo.org |
| Documentation Page | http://ihtsdo.org |
| Description | SNOMED Clinical Terms |
| License Information | This ontology is made available via the UMLS. Users of all UMLS ontologies must abide by the terms of the UMLS license, available at https://uts.nlm.nih.gov/license.html |
Reviews Add your review
| Review By VCDE on 06/16/2010 |
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No ratings submitted with this review
The review group found that SNOMED CT has fully, or in-part, satisfied all of the review criteria except one. The group recommended that SNOMED CT be "certified" as an NCI standard vocabulary. The group further recommended that usage and implementation be further defined formerly via a consensus approach to VCDE, and provide recommendations for further enhancing the vocabulary evaluation instrument, especially as a number of ontologies are on the vocabulary standardization roadmap. See https://cabig.nci.nih.gov/workspaces/VCDE/Meetings/VCDE_Workspace_Meetings/Oct2_VCDE_Meeting for more details on the SNOMED CT Review. |
Versions
| Version | Release Date | Upload Date | Downloads |
|---|---|---|---|
| 2011_07_31 | 07/31/2011 | 02/13/2012 | Unavailable |
| 2011_01_31 | 01/31/2011 | 08/11/2011 | Unavailable |
| 2010_07_31 | 07/31/2010 | 11/09/2010 | Unavailable |
| 2010_01_31 | 01/31/2010 | 05/12/2010 | Unavailable |
| 2009_07_31 | 07/31/2009 | 01/05/2010 | Unavailable |
| 2009_01_31 | 01/31/2009 | 07/31/2009 | Unavailable |
| more... | |||
Views Create new view
Expand All | Collapse All
- Description: The CORE Problem List Subset of SNOMED CT
- Ontology ID: 2040
- Generation Engine: Jena/ARQ
- Definition Language: Manual
- Created By: Vivian A. Auld, auld@nlm.nih.gov
| Version | Ontology Version | Release Date | Upload Date | Downloads |
|---|---|---|---|---|
| CORE_2011_01_31 | 2011_01_31 | 01/31/2011 | 08/16/2011 | Ontology View |
| CORE_2009_01_31 | 2009_07_31 | 01/31/2009 | 05/03/2010 | Ontology View |
- Description: A SNOMED subset of terms related to histological and clinical descriptions of Drug Induced Liver Injury (DILI). See Wang et al., "A Unifying Ontology to Integrate Histological and Clinical Observations for Drug-Induce Liver Injury" The American Journal of Pathology, 182:4,1180-1187 (2013). This view contains both of the DILIo major branches; SNOMED:Body Structure and SNOMED:Clinical finding Some of the class names have been changed to correspond to the preferred names in SNOMED of 7/31/2011. In DILIo publication -> in this file; Disorder of liver -> Disease of liver; Finding of general form of body -> General form of body - finding; Finding of size of liver -> size of liver - finding; Subacute necrosis of liver -> subacute hepatic necrosis
- Definition: This view was manually created by extracting the terms from SNOMED.
- Ontology ID: 2136
- Generation Engine: Jena/ARQ
- Definition Language: Manual
- Created By: James P. Sluka, JSluka@indiana.edu
| Version | Ontology Version | Release Date | Upload Date | Downloads |
|---|---|---|---|---|
| 1.0.0 | 2011_07_31 | 05/09/2013 | 05/09/2013 | Ontology View |
- Description: This a subset of Neoplasm_hamartoma view, based on Snomed clinical practice's used terms (Fondazione S.Maugeri anatomic pathology dep.). This subset is not to be meant exhaustive, it has been created in order to built a proper ontology for our project, ONCO-i2b2, through the NCBO Ontology Tools.
- Ontology ID: 2086
- Definition Language: Manual
- Created By: aridag@gmail.com
| Version | Ontology Version | Release Date | Upload Date | Downloads |
|---|---|---|---|---|
| unknown | 2011_01_31 | 11/16/2011 | 11/16/2011 | Ontology View |
- Description: subset of snomed-ct regarding neoplasm and hamartoma
- Ontology ID: 2085
- Definition Language: Manual
- Created By: aridag@gmail.com
| Version | Ontology Version | Release Date | Upload Date | Downloads |
|---|---|---|---|---|
| unknown | 2011_01_31 | 11/07/2011 | 11/07/2011 | Ontology View |
- Description: The Anatomy class subtree in SNOMED-CT
- Ontology ID: 2020
- Definition Language: Manual
- Created By: Tania Tudorache, tudorache@stanford.edu
| Version | Ontology Version | Release Date | Upload Date | Downloads |
|---|---|---|---|---|
| 1.2 | 2009_07_31 | 07/16/2010 | 07/16/2010 | Ontology View |
| 1.1 | 2009_07_31 | 03/23/2010 | 03/25/2010 | Ontology View |
| 1.0 | 2009_01_31 | 09/09/2009 | 10/20/2009 | Ontology View |
- Description: The Clinical Finding subtree of SNOMED CT
- Definition: Class subtree of ClinicalFinding
- Ontology ID: 2018
- Definition Language: Manual
- Created By: Tania Tudorache, tudorache@stanford.edu
| Version | Ontology Version | Release Date | Upload Date | Downloads |
|---|---|---|---|---|
| 1.2 | 2009_07_31 | 07/16/2010 | 07/16/2010 | Ontology View |
| 1.1 | 2009_07_31 | 03/23/2010 | 03/25/2010 | Ontology View |
| 1.0 | 2009_01_31 | 09/09/2009 | 10/20/2009 | Ontology View |
- Description: Ethnic Group From SNOMED CT
- Ontology ID: 2057
- Definition Language: Manual
- Created By: Aniket Bhandare, abhandare@path.wustl.edu
| Version | Ontology Version | Release Date | Upload Date | Downloads |
|---|---|---|---|---|
| 1.0 | 2010_01_31 | 09/21/2010 | 09/26/2010 | Ontology View |
- Description: The Morphologically Abnormal Structure subtree of SNOMED CT
- Definition: Class subtree of "Morphologically Abnormal Structure"
- Ontology ID: 2058
- Definition Language: Manual
- Created By: Csongor Nyulas, nyulas@stanford.edu
| Version | Ontology Version | Release Date | Upload Date | Downloads |
|---|---|---|---|---|
| 1.0 | 2010_01_31 | 09/23/2010 | 09/23/2010 | Ontology View |
- Description: The Organism subtree in SNOMED-CT
- Ontology ID: 2021
- Definition Language: Manual
- Created By: Tania Tudorache, tudorache@stanford.edu
| Version | Ontology Version | Release Date | Upload Date | Downloads |
|---|---|---|---|---|
| 1.1 | 2009_01_31 | 07/16/2010 | 07/16/2010 | Ontology View |
| 1.0 | 2009_01_31 | 09/09/2009 | 10/20/2009 | Ontology View |
- Description: SNOMED Terminos Clinicos (SNOMED CT), Edicion en Espanol, Distribucion Internacional, Octubre de 2008, 2009_04_30
- Ontology ID: 1416
- Created By: custserv@nlm.nih.gov
| Version | Ontology Version | Release Date | Upload Date | Downloads |
|---|---|---|---|---|
| 2009_04_30 | 2009_07_31 | 04/30/2009 | 01/11/2010 | Ontology View |
- Description: The Test Findings subtree in SNOMED-CT
- Ontology ID: 2019
- Definition Language: Manual
- Created By: Tania Tudorache, tudorache@stanford.edu
| Version | Ontology Version | Release Date | Upload Date | Downloads |
|---|---|---|---|---|
| 1.1 | 2009_01_31 | 07/16/2010 | 07/16/2010 | Ontology View |
| 1.0 | 2009_01_31 | 09/09/2009 | 10/20/2009 | Ontology View |
- Description: This a subset of snomed-ct regarding neoplasm and hamartoma, based on Snomed clinical practice's used terms (Fondazione S.Maugeri anatomic pathology dep.). This subset is not to be meant exhaustive, it has been created in order to built a proper ontology for our project, ONCO-i2b2, through the NCBO Ontology Tools.
- Ontology ID: 2088
- Generation Engine: Jena/ARQ
- Definition Language: Manual
- Created By: arianna dagliati, arianna.dagliati@unipv.it
| Version | Ontology Version | Release Date | Upload Date | Downloads |
|---|---|---|---|---|
| unknown | 2011_07_31 | 11/22/2011 | 11/22/2011 | Ontology View |
- Description: The Body Structure subtree in SNOMED-CT. It has been created in order to built a proper ontology for our project, ONCO-i2b2, through the NCBO Ontology Tools.
- Ontology ID: 2105
- Generation Engine: Jena/ARQ
- Definition Language: Manual
- Created By: Arianna Dagliati, arianna.dagliati@unipv.it
| Version | Ontology Version | Release Date | Upload Date | Downloads |
|---|---|---|---|---|
| unknown | 2011_07_31 | 04/23/2012 | 05/04/2012 | Ontology View |
| unknown | 2010_07_31 | 04/23/2012 | 04/23/2012 | Ontology View |
Projects Using This Ontology Create new project
| Project | Description | People | Institution |
|---|---|---|---|
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ISA software suite
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An open source ISA software suite and an extensible hierarchica...
An open source ISA software suite and an extensible hierarchical data structure implemented by a growing number of international public resources. It caters to data as diverse as stem cell, toxicogenomics, environmental gene surveys, microbial diversity studies, and a variety of metabolomics and metagenomics-based studies. But it maintains cross-domain compatibility in the way the experimental context is described.
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International collaborative effort
International collaborative effort
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Multiple institutions; leads at University of Oxford, UK |
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NCBO Resource Index
|
The NCBO Resource Web service is a system for ontology based a...
The NCBO Resource Web service is a system for ontology based annotation and indexing of biomedical data; the key functionality of this system is to enable users to locate biomedical data resources related to particular ontology concepts. The annotations are generated using the NCBO Annotator and presented through integration with BioPortal, enabling researchers to search for biomedical resources associated (annotated) with specific ontology terms. The NCBO Resources web service uses a concept recognizer (currently provided by the National Center for Integrative Biomedical Informatics, University of Michigan) to produce a set of annotations and expand these using ontology is_a relations in the ontology.
The system's indexing workflow processes the text metadata of diverse resource elements such as gene expression data sets, descriptions of radiology images, clinical trial reports, and PubMed article abstracts to annotate and index them with concepts from appropriate ontologies. Researchers can then search biomedical data sources using ontology concepts.
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NCBO
NCBO
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Stanford University |
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OntoCAT
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High level abstraction API (Java/REST/R) for interacting with o...
High level abstraction API (Java/REST/R) for interacting with ontology resources including local ontology files in standard OWL and OBO formats (via OWL API) and public ontology repositories: EBI Ontology Lookup Service (OLS) and NCBO BioPortal.
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Tomasz Adamus...
Tomasz Adamusiak, Helen Parkinson, Natalja Kurbatova, Misha Kapushesky, Morris Swertz
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EMBL-EBI, University of Groningen |
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RAD
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My RAD for PhD
My RAD for PhD
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farhanjk
farhanjk
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Dalhousie University |
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LogMap
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Logic-based and Scalable Ontology Matching. LogMap is a highly ...
Logic-based and Scalable Ontology Matching. LogMap is a highly scalable ontology matching system with `built-in' reasoning and diagnosis capabilities. Currently, LogMap is the only matching system that can sucessfully deal with semantically rich ontologies containing tens (and even hundreds) of thousands of classes. Furthermore, LogMap is able to produce a `clean' set of output mappings in many cases. Our experiments with the ontologies NCI, FMA and SNOMED CT con firm that our system can efficiently match even the largest existing bio-medical ontologies.
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Ernesto Jimenez Ruiz and Bernardo Cuenca Grau
Ernesto Jimenez Ruiz and Bernardo Cuenca Grau
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University of Oxford |
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Medical Dictionary
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Medical annotator & dictionary
Medical annotator & dictionary
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Dalhousie University | |
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Nomenclature for Anatomic Pathology (NAP)
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Unifying Nomenclature for Anatomic Pathology in Italy
Unifying Nomenclature for Anatomic Pathology in Italy
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Arrigo Bondi
Arrigo Bondi
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SIAPEC-IAP |
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Hypertrophic Cardiomyopathy
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The Hypertrophic Cardiomyopathy (HCM) project is focused on the...
The Hypertrophic Cardiomyopathy (HCM) project is focused on the prognosis of HCM, i.e on the prediction of the possible outcome for individual patients. We have developed an ontology describing the clinical and genetic data elements necessary for the diagnosis and the prognosis of the disease, which is composed of three modules: Clinical Evaluation, containing concepts relative to the clinical evaluation of patients; Genotype Analysis, containing concepts relative to the genetic analysis of biological samples; and Medical Classifications, an auxiliary module containing standard clinical classifications.
The HCM ontology is currently mapped to the following vocabularies: SNOMED CT, NCIt, Sequence Ontology and Gene Regulation Ontology.
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PID PhenomeR
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PID phenomer is a web-based integrated platform for collection,...
PID phenomer is a web-based integrated platform for collection, mapping, storage and visualization of observed phenotypic terms for primary immunodeficiency diseases (PIDs). It presents controlled vocabulary of ontology class structures and entities in downloadable formats such as Web Ontology Language (OWL) and Resource Description Framework (RDF) that facilitate global sharing and free exchange of PID data among other users' communities.
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RCAI Immunoinformatics Research Unit
RCAI Immunoinformatics Research Unit
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The Institute of Physical and Chemical Research (RIKEN), Yokohama |
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OntoMaton
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OntoMaton is a google spreadsheet application allowing for onto...
OntoMaton is a google spreadsheet application allowing for ontology search and tagging directly within google spreadsheets.
More information can be found here: https://github.com/ISA-tools/OntoMaton
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ISA team
ISA team
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Oxford University |
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International Fanconi Anemia Registry (IFAR)
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The International Fanconi Anemia Registry (IFAR) was started in...
The International Fanconi Anemia Registry (IFAR) was started in 1982 at The Rockefeller University by Dr. Arleen Auerbach. The purpose of the IFAR is to study the nature, diagnosis, and treatment of individuals with Fanconi anemia (FA). The IFAR group is creating an ontology-driven application for data entry and analysis. This will enable more standardized and advanced genotyping and phenotyping which will also allow us to assess any correlations between the two.
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Erica Sanborn...
Erica Sanborn, Agata Smogorzewska, Arleen Auerbach, Francis Lach, Edward Barbour, Shamim Mollah, Sajin Balakrishnan, Ummey Johra
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Rockefeller University |
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SemGen
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SemGen is a software tool for automating the modular compositio...
SemGen is a software tool for automating the modular composition and decomposition of biosimulation models. It uses BioPortal web services to provide model annotators access to reference ontology terms.
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Maxwell Neal, Daniel Cook, John Gennari
Maxwell Neal, Daniel Cook, John Gennari
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University of Washington |
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Epidemiology Term Annotation
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This script will map commonly used epidemiology variables to SNOMED or LOINC concepts
This script will map commonly used epidemiology variables to SNOMED or LOINC concepts
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Integrative Genomics
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Integration of high-dimensional genomic and phenomic data is ch...
Integration of high-dimensional genomic and phenomic data is challenged with scalability and semantic robustness for intuitive querying. To address these needs, we develop a hybrid ontology and graph database into a seamless datastore that we have named an ontolograph. The ontolograph leverages the best features of ontologies and graph databases.
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James Chen, Arka Pattanayak, Chaitanya Shivade
James Chen, Arka Pattanayak, Chaitanya Shivade
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The Ohio State University |
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Epiwork - Epidemic Marketplace
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The Epidemic Marketplace is a data integration platform where e...
The Epidemic Marketplace is a data integration platform where epidemiological data and related resources are stored, managed and made available, fostering collaboration.
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Fundacao da Faculdade de Ciencias da Universidade de Lisboa |
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