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Metrics

Number of classes:	238
Number of individuals:	0
Number of properties:	11
Maximum depth:	7
Maximum number of siblings:	17
Average number of siblings:	8
Classes with a single subclass:	8 Classes with a single subclass 'biconjugate gradient stabilized method' 'cellular automata update method' 'generalized minimal residual algorithm' 'ingenious conjugate gradients-squared method' 'iterative method for linear system' 'linearity of equation' 'metamodelling method' 'quasi-minimal residual method'
Classes with more than 25 subclasses:
Classes with no definition:	11 Classes with no definition kisao:KISAO_0000252(http://www.biomodels.net/kisao/KISAO#KISAO_0000252) kisao:KISAO_0000311(http://www.biomodels.net/kisao/KISAO#KISAO_0000311) kisao:KISAO_0000371(http://www.biomodels.net/kisao/KISAO#KISAO_0000371) kisao:KISAO_0000372(http://www.biomodels.net/kisao/KISAO#KISAO_0000372) kisao:KISAO_0000373(http://www.biomodels.net/kisao/KISAO#KISAO_0000373) kisao:KISAO_0000374(http://www.biomodels.net/kisao/KISAO#KISAO_0000374) kisao:KISAO_0000375(http://www.biomodels.net/kisao/KISAO#KISAO_0000375) kisao:KISAO_0000398(http://www.biomodels.net/kisao/KISAO#KISAO_0000398) kisao:KISAO_0000405(http://www.biomodels.net/kisao/KISAO#KISAO_0000405) kisao:KISAO_0000417(http://www.biomodels.net/kisao/KISAO#KISAO_0000417) kisao:KISAO_0000430(http://www.biomodels.net/kisao/KISAO#KISAO_0000430)

Details

Ontology Id	1410
Acronym	KiSAO
Visibility	Public
BioPortal PURL	http://purl.bioontology.org/ontology/KiSAO
Status	Production
Format	OWL
Categories	Other
Groups
Contact	BioModels.net team, biomodels-net-support@lists.sf.net
Home Page	http://biomodels.net/kisao/
Publications Page	http://www.nature.com/msb/journal/v7/n1/full/msb201177.html
Documentation Page	http://biomodels.net/kisao/
Description	The Kinetic Simulation Algorithm Ontology aims at providing support in unambiguously referring to simulation algorithms when describing a simulation experiment. It describes and classifies existing algorithms and their inter-relationships through the algorithm characteristics and parameters.

Reviews Add your review

Review By micheldumontier on 04/22/2011
Domain Coverage Correctness Quality Of Content Degree Of Formality 1. classes a. move deprecated classes into another 'development' ontology document so they don't show up in the release version b. added disjointness among classes (this helps support reasoning on negated existential axioms) c. LSODA variants not axiomatically differentiated 2. object properties a. deprecate 'lacksProperty', as you can create negated existential axioms b. 'isHybridOf' - more generally - 'is variant of' 3. datatype properties a. given that you're starting to develop a hierarchy of datatypes, you should strongly consider converting all of your datatypes into classes with restrictions on the kind of value that hold e.g. 'relative tolerance' (using manchester owl syntax) 'relative tolerance' subClassOf 'quantity' and 'has value' some decimal and 'has value' only decimal

Review By micheldumontier on 04/22/2011

1. classes a. move deprecated classes into another 'development' ontology document so they don't show up in the release version b. added disjointness among classes (this helps support reasoning on negated existential axioms) c. LSODA variants not axiomatically differentiated 2. object properties a. deprecate 'lacksProperty', as you can create negated existential axioms b. 'isHybridOf' - more generally - 'is variant of' 3. datatype properties a. given that you're starting to develop a hierarchy of datatypes, you should *strongly* consider converting all of your datatypes into classes with restrictions on the kind of value that hold e.g. 'relative tolerance' (using manchester owl syntax) 'relative tolerance' subClassOf 'quantity' and 'has value' some decimal and 'has value' only decimal

Versions

Version	Release Date	Upload Date	Downloads
2.3.4	01/28/2013	01/28/2013	Ontology / Diff
2.3.3	12/07/2012	12/07/2012	Ontology
unknown archived	12/06/2012	12/06/2012	Ontology
2.3.3	11/29/2012	11/29/2012	Ontology
2.3.2	09/26/2012	09/26/2012	Ontology
2.3.1	05/24/2012	05/24/2012	Ontology
2.3	02/09/2012	02/09/2012	Ontology
2.3 archived	02/09/2012	02/09/2012	Ontology
2.2	07/26/2011	07/26/2011	Ontology
2.1 archived	07/26/2011	07/25/2011	Ontology
Sat Jan 24 18:58:35 2009 UTC	01/24/2009	11/12/2009	Ontology
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Projects Using This Ontology Create new project

Project	Description	People	Institution
SED-ML	The Simulation Experiment Description Markup Language (SED-ML) ... The Simulation Experiment Description Markup Language (SED-ML) is an XML-based format for encoding simulation experiments, following the requirements defined in the MIASE guidelines. SED-ML allows the definition of the model(s) to be used, the experimental task(s) to be run, and the result(s) to be produced.	SED-ML editors SED-ML editors	COMBINE
OntoCAT	High level abstraction API (Java/REST/R) for interacting with o... High level abstraction API (Java/REST/R) for interacting with ontology resources including local ontology files in standard OWL and OBO formats (via OWL API) and public ontology repositories: EBI Ontology Lookup Service (OLS) and NCBO BioPortal.	Tomasz Adamus... Tomasz Adamusiak, Helen Parkinson, Natalja Kurbatova, Misha Kapushesky, Morris Swertz	EMBL-EBI, University of Groningen
OntoMaton	OntoMaton is a google spreadsheet application allowing for onto... OntoMaton is a google spreadsheet application allowing for ontology search and tagging directly within google spreadsheets. More information can be found here: https://github.com/ISA-tools/OntoMaton	ISA team ISA team	Oxford University