Uber Anatomy Ontology

Last uploaded: March 22, 2024
Preferred Name

pharyngeal pouch

Synonyms

branchial pouch

visceral pouch

visceral pouches

pharyngeal pouches

Definitions

The pouches are polarized structures. For example, whereas the rostral half of each pouch expresses Bmp-7, the caudal half expresses FGF-8 and the dorsal aspect of each pouch is marked via its expression of Pax-1. each pouch has an individual sense of identity. Shh expression is a prominent early feature of the caudal endoderm of the second arch, and individual pouches mark the anterior limits of expression of Hox genes within the pharyngeal endoderm; Hox-a2 has a rostral boundary at the second pouch, Hox-a3 at the third pouch and Hox-a4 at the most caudal pouch[PMID:16313389] An internal pocketing of pharyngeal endoderm that contacts a region of ectoderm (a pharyngeal cleft) and interdigitates in the anterior and posterior directions with the pharyngeal arches.

ID

http://purl.obolibrary.org/obo/UBERON_0004117

comment

The pouches are polarized structures. For example, whereas the rostral half of each pouch expresses Bmp-7, the caudal half expresses FGF-8 and the dorsal aspect of each pouch is marked via its expression of Pax-1. each pouch has an individual sense of identity. Shh expression is a prominent early feature of the caudal endoderm of the second arch, and individual pouches mark the anterior limits of expression of Hox genes within the pharyngeal endoderm; Hox-a2 has a rostral boundary at the second pouch, Hox-a3 at the third pouch and Hox-a4 at the most caudal pouch[PMID:16313389]

database_cross_reference

UMLS:C0231067

VHOG:0001203

TAO:0001106

XAO:0000282

EFO:0003627

NCIT:C34252

SCTID:34674002

ZFA:0001106

AAO:0011113

Wikipedia:Pharyngeal_pouch_(embryology)

EMAPA:32752

EHDAA:1086

EHDAA:1669

EHDAA:579

EHDAA:617

FMA:293063

definition

An internal pocketing of pharyngeal endoderm that contacts a region of ectoderm (a pharyngeal cleft) and interdigitates in the anterior and posterior directions with the pharyngeal arches.

develops_from

http://purl.obolibrary.org/obo/UBERON_0007690

external_definition

Outpocketings of pharyngeal endoderm that interdigitate with the neural crest derived pharyngeal arches. The pouches later fuse with the surface ectoderm to form the gill slits. Crump et al, 2004.[TAO]

external_ontology_notes

EMAPA also includes a distinct pouch endoderm

has_exact_synonym

branchial pouch

visceral pouch

has_obo_namespace

uberon

has_related_synonym

visceral pouches

pharyngeal pouches

homology_notes

A conserved feature of all vertebrate embryos is the presence of a series of bulges on the lateral surface of the head, the pharyngeal arches; it is within these structures that the nerves, muscles and skeletal components of the pharyngeal apparatus are laid down. The pharyngeal arches are separated by endodermal outpocketings, the pharyngeal pouches.[well established][VHOG]

id

UBERON:0004117

in_subset

http://purl.obolibrary.org/obo/uberon/core#efo_slim

http://purl.obolibrary.org/obo/uberon/core#vertebrate_core

http://purl.obolibrary.org/obo/uberon/core#pheno_slim

label

pharyngeal pouch

notation

UBERON:0004117

only in taxon

http://purl.obolibrary.org/obo/NCBITaxon_7711

overlaps

http://purl.obolibrary.org/obo/UBERON_0002539

part_of

http://purl.obolibrary.org/obo/UBERON_0000922

http://purl.obolibrary.org/obo/UBERON_0008814

prefLabel

pharyngeal pouch

treeView

http://purl.obolibrary.org/obo/UBERON_0000922

http://purl.obolibrary.org/obo/UBERON_0007690

http://purl.obolibrary.org/obo/UBERON_0008814

subClassOf

http://purl.obolibrary.org/obo/UBERON_0002050

http://purl.obolibrary.org/obo/UBERON_0005291

http://purl.obolibrary.org/obo/UBERON_0000490

http://purl.obolibrary.org/obo/UBERON_0003258

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Delete Mapping To Ontology Source
http://purl.obolibrary.org/obo/UBERON_0004117 GO-PLUS SAME_URI
http://purl.obolibrary.org/obo/UBERON_0004117 DOID SAME_URI
http://purl.obolibrary.org/obo/UBERON_0004117 PATO SAME_URI
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http://purl.obolibrary.org/obo/UBERON_0004117 CL SAME_URI
http://purl.obolibrary.org/obo/UBERON_0004117 MONDO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0004117 EFO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0004117 OAE SAME_URI
http://purl.obolibrary.org/obo/UBERON_0004117 FOVT SAME_URI
http://purl.obolibrary.org/obo/UBERON_0004117 PCL SAME_URI
http://purl.obolibrary.org/obo/UBERON_0004117 NIFDYS SAME_URI
http://purl.obolibrary.org/obo/UBERON_0004117 NBO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0004117 HHEAR SAME_URI
http://purl.obolibrary.org/obo/UBERON_0004117 ODAE SAME_URI
http://purl.obolibrary.org/obo/UBERON_0004117 UPHENO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0004117 OCVDAE SAME_URI
http://purl.obolibrary.org/obo/UBERON_0004117 NIFSTD SAME_URI
http://purl.obolibrary.org/obo/UBERON_0004117 KTAO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0004117 MAXO SAME_URI
http://purl.obolibrary.org/obo/UBERON_0004117 FNS-H SAME_URI
http://purl.obolibrary.org/obo/UBERON_0004117 GO-PLUS LOOM
http://purl.obolibrary.org/obo/XAO_0004260 XPO LOOM
http://purl.obolibrary.org/obo/ZFA_0001106 ZP LOOM
http://purl.obolibrary.org/obo/UBERON_0004117 EFO LOOM
http://purl.obolibrary.org/obo/UBERON_0004117 CL LOOM
http://purl.obolibrary.org/obo/UBERON_0004117 DOID LOOM
http://purl.obolibrary.org/obo/UBERON_0004117 PATO LOOM
http://purl.obolibrary.org/obo/UBERON_0004117 OBA LOOM
http://purl.obolibrary.org/obo/VHOG_0001203 VHOG LOOM
http://purl.obolibrary.org/obo/ZFA_0001106 ZFA LOOM
http://purl.obolibrary.org/obo/ZFA_0001106 UPHENO LOOM
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C34252 NCIT LOOM
http://purl.obolibrary.org/obo/XAO_0004260 UPHENO LOOM
http://purl.obolibrary.org/obo/XAO_0004260 XAO LOOM
http://sbmi.uth.tmc.edu/ontology/ochv#22597 OCHV LOOM
http://purl.obolibrary.org/obo/NCIT_C34252 BERO LOOM
http://purl.bioontology.org/ontology/MEDDRA/10034832 MEDDRA LOOM
http://purl.bioontology.org/ontology/ICD10/Q38.7 ICD10 LOOM
http://purl.obolibrary.org/obo/TAO_0001106 TAO LOOM
http://purl.obolibrary.org/obo/UBERON_0004117 OAE LOOM
http://purl.obolibrary.org/obo/UBERON_0004117 FOVT LOOM
http://purl.obolibrary.org/obo/UBERON_0004117 PCL LOOM
http://purl.obolibrary.org/obo/UBERON_0004117 NIFDYS LOOM
http://purl.obolibrary.org/obo/UBERON_0004117 NBO LOOM
http://purl.obolibrary.org/obo/UBERON_0004117 HHEAR LOOM
http://purl.obolibrary.org/obo/UBERON_0004117 ODAE LOOM
http://purl.obolibrary.org/obo/UBERON_0004117 UPHENO LOOM
http://purl.obolibrary.org/obo/UBERON_0004117 OCVDAE LOOM
http://purl.obolibrary.org/obo/UBERON_0004117 NIFSTD LOOM
http://purl.obolibrary.org/obo/UBERON_0004117 KTAO LOOM
http://purl.obolibrary.org/obo/UBERON_0004117 MAXO LOOM
http://purl.obolibrary.org/obo/UBERON_0004117 FNS-H LOOM
http://sbmi.uth.tmc.edu/ontology/ochv#C0231067 OCHV LOOM
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#Pharyngeal_Pouch SYN LOOM
http://sbmi.uth.tmc.edu/ontology/ochv#C0392485 OCHV LOOM
http://purl.org/sig/ont/fma/fma293063 FMA LOOM
http://radlex.org/RID/RID4819 RADLEX LOOM
http://purl.bioontology.org/ontology/RCD/XE1Kj RCD LOOM
http://purl.bioontology.org/ontology/ICPC2P/R89005 ICPC2P LOOM