General Formal Ontology: Biology Summary

Metrics

Number of classes:	170
Number of individuals:	1
Number of properties:	73
Maximum depth:	11
Maximum number of siblings:	11
Average number of siblings:	5
Classes with a single subclass:	32 Classes with a single subclass gfo:Amount_of_substrate gfo:Continuous_change gfo:Extrinsic_change gfo:Function gfo:Independent gfo:Instantanuous_change gfo:Intrinsic_change gfo:Mass_entity gfo:Material_structure gfo:Persistant gfo:Situation gfo:Situoid gfo:Spatial_region gfo:Temporal_region http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Amino_acid_molecule http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Anatomical_part_of_animal http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Anatomical_part_of_dictyostelium_discoideum http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Anatomical_part_of_plant http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Arabidopsis_anatomical_development http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Arabidopsis_development_stage http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Atom http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Cell http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Chemical_process http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Chemical_reaction http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Experiment http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Method http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Monocellular_organism http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Multicellular_organism http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Plant_anatomical_development http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Plant_development_stage http://reliant.teknowledge.com/DAML/SUMO.owl#ElementalSubstance http://www.co-ode.org/ontologies/amino-acid/2005/10/11/amino-acid.owl#AminoAcid
Classes with more than 25 subclasses:
Classes with no definition:	170

Details

Ontology Id	1440
Acronym	GFO-Bio
Visibility	Public
BioPortal PURL	http://purl.bioontology.org/ontology/GFO-Bio
Status
Format	OWL
Categories	Animal Gross Anatomy Subcellular anatomy Mouse Anatomy Cell Gene Product Gross Anatomy Plant Anatomy Molecule Biological Process Development Human Developmental Anatomy Protein Anatomy Plant Animal Development Phenotype Subcellular Chemical All Organisms Human Cellular anatomy Plant Development
Groups
Contact	Robert Hoehndorf, leechuck@leechuck.de
Home Page	http://www.onto-med.de/ontologies/gfo-bio/
Publications Page
Documentation Page
Description	GFO-Bio is a biological core ontology built on the General Formal Ontology.

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Versions

Version	Release Date	Upload Date	Downloads
1.1	07/12/2010	03/02/2010	Ontology

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Project	Description	People	Institution
OntoCAT	High level abstraction API (Java/REST/R) for interacting with o... High level abstraction API (Java/REST/R) for interacting with ontology resources including local ontology files in standard OWL and OBO formats (via OWL API) and public ontology repositories: EBI Ontology Lookup Service (OLS) and NCBO BioPortal.	Tomasz Adamus... Tomasz Adamusiak, Helen Parkinson, Natalja Kurbatova, Misha Kapushesky, Morris Swertz	EMBL-EBI, University of Groningen
OntoMaton	OntoMaton is a google spreadsheet application allowing for onto... OntoMaton is a google spreadsheet application allowing for ontology search and tagging directly within google spreadsheets. More information can be found here: https://github.com/ISA-tools/OntoMaton	ISA team ISA team	Oxford University

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